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2ikc

From Proteopedia

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[[Image:2ikc.gif|left|200px]]
 
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{{Structure
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==Crystal structure of sheep lactoperoxidase at 3.25 A resolution reveals the binding sites for formate==
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|PDB= 2ikc |SIZE=350|CAPTION= <scene name='initialview01'>2ikc</scene>, resolution 3.25&Aring;
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<StructureSection load='2ikc' size='340' side='right'caption='[[2ikc]], [[Resolution|resolution]] 3.25&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>
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<table><tr><td colspan='2'>[[2ikc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ovis_aries Ovis aries]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IKC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IKC FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Peroxidase Peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.7 1.11.1.7] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.25&#8491;</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ikc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ikc OCA], [https://pdbe.org/2ikc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ikc RCSB], [https://www.ebi.ac.uk/pdbsum/2ikc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ikc ProSAT]</span></td></tr>
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|RELATEDENTRY=[[2gj1|2GJ1]], [[2gjm|2GJM]]
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ikc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ikc OCA], [http://www.ebi.ac.uk/pdbsum/2ikc PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ikc RCSB]</span>
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== Evolutionary Conservation ==
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}}
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ik/2ikc_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ikc ConSurf].
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<div style="clear:both"></div>
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'''Crystal structure of sheep lactoperoxidase at 3.25 A resolution reveals the binding sites for formate'''
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==See Also==
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*[[Lactoperoxidase|Lactoperoxidase]]
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__TOC__
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==About this Structure==
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</StructureSection>
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2IKC is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Ovis_aries Ovis aries]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IKC OCA].
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[[Category: Large Structures]]
[[Category: Ovis aries]]
[[Category: Ovis aries]]
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[[Category: Peroxidase]]
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[[Category: Sharma S]]
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[[Category: Single protein]]
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[[Category: Sheikh IA]]
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[[Category: Sharma, S.]]
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[[Category: Singh AK]]
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[[Category: Sheikh, I A.]]
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[[Category: Singh N]]
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[[Category: Singh, A K.]]
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[[Category: Singh TP]]
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[[Category: Singh, N.]]
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[[Category: Singh, T P.]]
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[[Category: formate]]
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[[Category: heme]]
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[[Category: peroxidase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:45:26 2008''
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Current revision

Crystal structure of sheep lactoperoxidase at 3.25 A resolution reveals the binding sites for formate

PDB ID 2ikc

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