2nmp
From Proteopedia
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==Crystal structure of human Cystathionine gamma lyase== | ==Crystal structure of human Cystathionine gamma lyase== | ||
| - | <StructureSection load='2nmp' size='340' side='right' caption='[[2nmp]], [[Resolution|resolution]] 2.60Å' scene=''> | + | <StructureSection load='2nmp' size='340' side='right'caption='[[2nmp]], [[Resolution|resolution]] 2.60Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2nmp]] is a 4 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2nmp]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NMP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NMP FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6Å</td></tr> |
| - | <tr><td class="sblockLbl"><b>[[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nmp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmp OCA], [https://pdbe.org/2nmp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nmp RCSB], [https://www.ebi.ac.uk/pdbsum/2nmp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nmp ProSAT]</span></td></tr> |
| - | <table> | + | </table> |
== Disease == | == Disease == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/CGL_HUMAN CGL_HUMAN] Defects in CTH are the cause of cystathioninuria (CSTNU) [MIM:[https://omim.org/entry/219500 219500]. It is an autosomal recessive phenotype characterized by abnormal accumulation of plasma cystathionine, leading to increased urinary excretion.<ref>PMID:18476726</ref> <ref>PMID:12574942</ref> |
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/CGL_HUMAN CGL_HUMAN] Catalyzes the last step in the trans-sulfuration pathway from methionine to cysteine. Has broad substrate specificity. Converts cystathionine to cysteine, ammonia and 2-oxobutanoate. Converts two cysteine molecules to lanthionine and hydrogen sulfide. Can also accept homocysteine as substrate. Specificity depends on the levels of the endogenous substrates. Generates the endogenous signaling molecule hydrogen sulfide (H2S), and so contributes to the regulation of blood pressure. Acts as a cysteine-protein sulfhydrase by mediating sulfhydration of target proteins: sulfhydration consists of converting -SH groups into -SSH on specific cysteine residues of target proteins such as GAPDH, PTPN1 and NF-kappa-B subunit RELA, thereby regulating their function.<ref>PMID:19261609</ref> <ref>PMID:22169477</ref> <ref>PMID:19019829</ref> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nm/2nmp_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nm/2nmp_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nmp ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2nmp" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
| - | [[Category: Arrowsmith | + | [[Category: Large Structures]] |
| - | [[Category: Berglund | + | [[Category: Arrowsmith C]] |
| - | [[Category: Busam | + | [[Category: Berglund H]] |
| - | [[Category: Collins | + | [[Category: Busam RD]] |
| - | [[Category: Edwards | + | [[Category: Collins R]] |
| - | [[Category: Ericsson | + | [[Category: Edwards A]] |
| - | [[Category: Flodin | + | [[Category: Ericsson UB]] |
| - | [[Category: Flores | + | [[Category: Flodin S]] |
| - | [[Category: Graslund | + | [[Category: Flores A]] |
| - | [[Category: Hallberg | + | [[Category: Graslund S]] |
| - | [[Category: Hammarstrom | + | [[Category: Hallberg BM]] |
| - | [[Category: Hogbom | + | [[Category: Hammarstrom M]] |
| - | [[Category: Holmberg-Schiavone | + | [[Category: Hogbom M]] |
| - | [[Category: Johansson | + | [[Category: Holmberg-Schiavone L]] |
| - | [[Category: Karlberg | + | [[Category: Johansson I]] |
| - | [[Category: Kotenyova | + | [[Category: Karlberg T]] |
| - | [[Category: Magnusdottir | + | [[Category: Kotenyova T]] |
| - | [[Category: Moche | + | [[Category: Magnusdottir A]] |
| - | [[Category: Nilsson | + | [[Category: Moche M]] |
| - | [[Category: Nordlund | + | [[Category: Nilsson ME]] |
| - | [[Category: Nyman | + | [[Category: Nordlund P]] |
| - | [[Category: Ogg | + | [[Category: Nyman T]] |
| - | [[Category: Persson | + | [[Category: Ogg D]] |
| - | + | [[Category: Persson C]] | |
| - | [[Category: Sagemark | + | [[Category: Sagemark J]] |
| - | [[Category: Stenmark | + | [[Category: Stenmark P]] |
| - | [[Category: Sundstrom | + | [[Category: Sundstrom M]] |
| - | [[Category: Thorsell | + | [[Category: Thorsell AG]] |
| - | [[Category: Uppenberg | + | [[Category: Uppenberg J]] |
| - | [[Category: Wallden | + | [[Category: Wallden K]] |
| - | [[Category: Weigelt | + | [[Category: Weigelt J]] |
| - | [[Category: Van-den-Berg | + | [[Category: Van-den-Berg S]] |
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Current revision
Crystal structure of human Cystathionine gamma lyase
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Categories: Homo sapiens | Large Structures | Arrowsmith C | Berglund H | Busam RD | Collins R | Edwards A | Ericsson UB | Flodin S | Flores A | Graslund S | Hallberg BM | Hammarstrom M | Hogbom M | Holmberg-Schiavone L | Johansson I | Karlberg T | Kotenyova T | Magnusdottir A | Moche M | Nilsson ME | Nordlund P | Nyman T | Ogg D | Persson C | Sagemark J | Stenmark P | Sundstrom M | Thorsell AG | Uppenberg J | Wallden K | Weigelt J | Van-den-Berg S

