This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2pbq
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of molybdenum cofactor biosynthesis (aq_061) From aquifex aeolicus VF5== | ==Crystal structure of molybdenum cofactor biosynthesis (aq_061) From aquifex aeolicus VF5== | ||
| - | <StructureSection load='2pbq' size='340' side='right' caption='[[2pbq]], [[Resolution|resolution]] 1.70Å' scene=''> | + | <StructureSection load='2pbq' size='340' side='right'caption='[[2pbq]], [[Resolution|resolution]] 1.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2pbq]] is a 3 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2pbq]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PBQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PBQ FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
| - | <table> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pbq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pbq OCA], [https://pdbe.org/2pbq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pbq RCSB], [https://www.ebi.ac.uk/pdbsum/2pbq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pbq ProSAT], [https://www.topsan.org/Proteins/RSGI/2pbq TOPSAN]</span></td></tr> |
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/O66472_AQUAE O66472_AQUAE] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/2pbq_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/2pbq_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pbq ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Aquifex aeolicus]] | + | [[Category: Aquifex aeolicus VF5]] |
| - | [[Category: Agari | + | [[Category: Large Structures]] |
| - | [[Category: Ebihara | + | [[Category: Agari Y]] |
| - | [[Category: Jeyakanthan | + | [[Category: Ebihara A]] |
| - | [[Category: Kanaujia | + | [[Category: Jeyakanthan J]] |
| - | [[Category: Kuramitsu | + | [[Category: Kanaujia SP]] |
| - | [[Category: Mahesh | + | [[Category: Kuramitsu S]] |
| - | + | [[Category: Mahesh S]] | |
| - | [[Category: Ramakumar | + | [[Category: Ramakumar S]] |
| - | [[Category: Sekar | + | [[Category: Sekar K]] |
| - | [[Category: Shinkai | + | [[Category: Shinkai A]] |
| - | [[Category: Shiro | + | [[Category: Shiro Y]] |
| - | [[Category: Yokoyama | + | [[Category: Yokoyama S]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of molybdenum cofactor biosynthesis (aq_061) From aquifex aeolicus VF5
| |||||||||||
Categories: Aquifex aeolicus VF5 | Large Structures | Agari Y | Ebihara A | Jeyakanthan J | Kanaujia SP | Kuramitsu S | Mahesh S | Ramakumar S | Sekar K | Shinkai A | Shiro Y | Yokoyama S
