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2pcl
From Proteopedia
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==Crystal structure of ABC transporter with complex (aq_297) from aquifex aeolicus VF5== | ==Crystal structure of ABC transporter with complex (aq_297) from aquifex aeolicus VF5== | ||
| - | <StructureSection load='2pcl' size='340' side='right' caption='[[2pcl]], [[Resolution|resolution]] 1.70Å' scene=''> | + | <StructureSection load='2pcl' size='340' side='right'caption='[[2pcl]], [[Resolution|resolution]] 1.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2pcl]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2pcl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PCL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PCL FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pcl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pcl OCA], [https://pdbe.org/2pcl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pcl RCSB], [https://www.ebi.ac.uk/pdbsum/2pcl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pcl ProSAT], [https://www.topsan.org/Proteins/RSGI/2pcl TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/LOLD_AQUAE LOLD_AQUAE] Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner (By similarity). |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pc/2pcl_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pc/2pcl_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pcl ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[ABC transporter|ABC transporter]] | + | *[[ABC transporter 3D structures|ABC transporter 3D structures]] |
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Aquifex aeolicus]] | + | [[Category: Aquifex aeolicus VF5]] |
| - | [[Category: Ebihara | + | [[Category: Large Structures]] |
| - | [[Category: Jeyakanthan | + | [[Category: Ebihara A]] |
| - | [[Category: Kanaujia | + | [[Category: Jeyakanthan J]] |
| - | [[Category: Kuramitsu | + | [[Category: Kanaujia SP]] |
| - | [[Category: Nakagawa | + | [[Category: Kuramitsu S]] |
| - | + | [[Category: Nakagawa N]] | |
| - | [[Category: Rafi | + | [[Category: Rafi ZA]] |
| - | [[Category: Sekar | + | [[Category: Sekar K]] |
| - | [[Category: Shinkai | + | [[Category: Shinkai A]] |
| - | [[Category: Shiro | + | [[Category: Shiro Y]] |
| - | [[Category: Yokoyama | + | [[Category: Yokoyama S]] |
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Current revision
Crystal structure of ABC transporter with complex (aq_297) from aquifex aeolicus VF5
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Categories: Aquifex aeolicus VF5 | Large Structures | Ebihara A | Jeyakanthan J | Kanaujia SP | Kuramitsu S | Nakagawa N | Rafi ZA | Sekar K | Shinkai A | Shiro Y | Yokoyama S
