This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2yw8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2yw8" [edit=sysop:move=sysop])
Current revision (09:07, 25 October 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2yw8.png|left|200px]]
 
-
{{STRUCTURE_2yw8| PDB=2yw8 | SCENE= }}
+
==Crystal structure of human RUN and FYVE domain-containing protein==
-
 
+
<StructureSection load='2yw8' size='340' side='right'caption='[[2yw8]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-
===Crystal structure of human RUN and FYVE domain-containing protein===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2yw8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YW8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YW8 FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
[[2yw8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YW8 OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yw8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yw8 OCA], [https://pdbe.org/2yw8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yw8 RCSB], [https://www.ebi.ac.uk/pdbsum/2yw8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yw8 ProSAT], [https://www.topsan.org/Proteins/RSGI/2yw8 TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RUFY1_HUMAN RUFY1_HUMAN] Binds phospholipid vesicles containing phosphatidylinositol 3-phosphate and participates in early endosomal trafficking.<ref>PMID:14617813</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2yw8_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yw8 ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Kishishita, S.]]
+
[[Category: Large Structures]]
-
[[Category: Murayama, K.]]
+
[[Category: Kishishita S]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Murayama K]]
-
[[Category: Shirouzu, M.]]
+
[[Category: Shirouzu M]]
-
[[Category: Takemoto, C.]]
+
[[Category: Takemoto C]]
-
[[Category: Terada, T.]]
+
[[Category: Terada T]]
-
[[Category: Wang, H.]]
+
[[Category: Wang H]]
-
[[Category: Fyve domain]]
+
-
[[Category: Metal binding protein]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Structure genomic]]
+

Current revision

Crystal structure of human RUN and FYVE domain-containing protein

PDB ID 2yw8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools