This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ywd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:08, 25 October 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of glutamine amidotransferase==
==Crystal structure of glutamine amidotransferase==
-
<StructureSection load='2ywd' size='340' side='right' caption='[[2ywd]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='2ywd' size='340' side='right'caption='[[2ywd]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2ywd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YWD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2ywd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YWD FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pdxT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ywd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywd OCA], [http://pdbe.org/2ywd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ywd RCSB], [http://www.ebi.ac.uk/pdbsum/2ywd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywd ProSAT], [http://www.topsan.org/Proteins/RSGI/2ywd TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ywd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywd OCA], [https://pdbe.org/2ywd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ywd RCSB], [https://www.ebi.ac.uk/pdbsum/2ywd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywd ProSAT], [https://www.topsan.org/Proteins/RSGI/2ywd TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PDXT_THET8 PDXT_THET8]] Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS (By similarity).
+
[https://www.uniprot.org/uniprot/PDXT_THET8 PDXT_THET8] Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2ywd_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2ywd_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 21: Line 21:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Thet8]]
+
[[Category: Large Structures]]
-
[[Category: Ebihara, A]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Kuramitsu, S]]
+
[[Category: Ebihara A]]
-
[[Category: Manzoku, M]]
+
[[Category: Kuramitsu S]]
-
[[Category: Structural genomic]]
+
[[Category: Manzoku M]]
-
[[Category: Yokoyama, S]]
+
[[Category: Yokoyama S]]
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Pyridoxine biosynthesis]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of glutamine amidotransferase

PDB ID 2ywd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools