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2yxr
From Proteopedia
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| - | [[Image:2yxr.jpg|left|200px]]<br /><applet load="2yxr" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2yxr, resolution 3.60Å" /> | ||
| - | '''The plug domain of the SecY protein stablizes the closed state of the translocation channel and maintains a membrane seal'''<br /> | ||
| - | == | + | ==The plug domain of the SecY protein stablizes the closed state of the translocation channel and maintains a membrane seal== |
| - | + | <StructureSection load='2yxr' size='340' side='right'caption='[[2yxr]], [[Resolution|resolution]] 3.60Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2yxr]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YXR FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.6Å</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yxr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yxr OCA], [https://pdbe.org/2yxr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yxr RCSB], [https://www.ebi.ac.uk/pdbsum/2yxr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yxr ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/SECY_METJA SECY_METJA] The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/2yxr_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yxr ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | == | + | ==See Also== |
| - | + | *[[Preprotein translocase|Preprotein translocase]] | |
| + | *[[Preprotein translocase 3D structures|Preprotein translocase 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Methanocaldococcus jannaschii]] | [[Category: Methanocaldococcus jannaschii]] | ||
| - | + | [[Category: Li W]] | |
| - | [[Category: Li | + | [[Category: Schulman S]] |
| - | [[Category: Schulman | + | |
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Current revision
The plug domain of the SecY protein stablizes the closed state of the translocation channel and maintains a membrane seal
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