This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5lyi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:56, 25 October 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of 1 in complex with tafCPB==
==Crystal structure of 1 in complex with tafCPB==
-
<StructureSection load='5lyi' size='340' side='right' caption='[[5lyi]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
+
<StructureSection load='5lyi' size='340' side='right'caption='[[5lyi]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5lyi]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LYI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5lyi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LYI FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=T4F:(2~{S})-6-AZANYL-2-[[(2~{S})-3-CYCLOHEXYL-1-OXIDANYLIDENE-1-[[(1~{R},2~{S},4~{R})-1,7,7-TRIMETHYL-2-BICYCLO[2.2.1]HEPTANYL]AMINO]PROPAN-2-YL]SULFAMOYLAMINO]HEXANOIC+ACID'>T4F</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.64&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5lyl|5lyl]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=T4F:(2~{S})-6-AZANYL-2-[[(2~{S})-3-CYCLOHEXYL-1-OXIDANYLIDENE-1-[[(1~{R},2~{S},4~{R})-1,7,7-TRIMETHYL-2-BICYCLO[2.2.1]HEPTANYL]AMINO]PROPAN-2-YL]SULFAMOYLAMINO]HEXANOIC+ACID'>T4F</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Carboxypeptidase_B Carboxypeptidase B], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.17.2 3.4.17.2] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lyi OCA], [https://pdbe.org/5lyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lyi RCSB], [https://www.ebi.ac.uk/pdbsum/5lyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lyi ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lyi OCA], [http://pdbe.org/5lyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lyi RCSB], [http://www.ebi.ac.uk/pdbsum/5lyi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lyi ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CBPB1_PIG CBPB1_PIG]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 19:
</div>
</div>
<div class="pdbe-citations 5lyi" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5lyi" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Carboxypeptidase 3D structures|Carboxypeptidase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Carboxypeptidase B]]
+
[[Category: Large Structures]]
-
[[Category: Liesum, A]]
+
[[Category: Sus scrofa]]
-
[[Category: Loenze, P]]
+
[[Category: Liesum A]]
-
[[Category: Schreuder, H]]
+
[[Category: Loenze P]]
-
[[Category: Hydrolase]]
+
[[Category: Schreuder H]]
-
[[Category: Tafinized carboxypeptidase b]]
+

Current revision

Crystal structure of 1 in complex with tafCPB

PDB ID 5lyi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools