2z1n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:19, 1 November 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2z1n.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of APE0912 from Aeropyrum pernix K1==
-
|PDB= 2z1n |SIZE=350|CAPTION= <scene name='initialview01'>2z1n</scene>, resolution 1.80&Aring;
+
<StructureSection load='2z1n' size='340' side='right'caption='[[2z1n]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Na+Binding+Site+For+Residue+A+1001'>AC1</scene> and <scene name='pdbsite=AC2:Na+Binding+Site+For+Residue+A+2001'>AC2</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
+
<table><tr><td colspan='2'>[[2z1n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeropyrum_pernix_K1 Aeropyrum pernix K1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z1N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z1N FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z1n OCA], [https://pdbe.org/2z1n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z1n RCSB], [https://www.ebi.ac.uk/pdbsum/2z1n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z1n ProSAT]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2z1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z1n OCA], [http://www.ebi.ac.uk/pdbsum/2z1n PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2z1n RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q9YDK1_AERPE Q9YDK1_AERPE]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of APE0912 from Aeropyrum pernix K1'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z1/2z1n_consurf.spt"</scriptWhenChecked>
-
2Z1N is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z1N OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==Reference==
+
</jmolCheckbox>
-
A unique catalytic triad revealed by the crystal structure of APE0912, a short-chain dehydrogenase/reductase family protein from Aeropyrum pernix K1., Yamamura A, Ichimura T, Mimoto F, Ohtsuka J, Miyazono K, Okai M, Kamo M, Lee WC, Nagata K, Tanokura M, Proteins. 2008 Mar;70(4):1640-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18175326 18175326]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z1n ConSurf].
-
[[Category: Aeropyrum pernix]]
+
<div style="clear:both"></div>
-
[[Category: Single protein]]
+
__TOC__
-
[[Category: Ichimura, T.]]
+
</StructureSection>
-
[[Category: Kamo, M.]]
+
[[Category: Aeropyrum pernix K1]]
-
[[Category: Lee, W C.]]
+
[[Category: Large Structures]]
-
[[Category: Mimoto, F.]]
+
[[Category: Ichimura T]]
-
[[Category: Miyazono, K.]]
+
[[Category: Kamo M]]
-
[[Category: Nagata, K.]]
+
[[Category: Lee W-C]]
-
[[Category: Ohtsuka, J.]]
+
[[Category: Mimoto F]]
-
[[Category: Okai, M.]]
+
[[Category: Miyazono K]]
-
[[Category: Tanokura, M.]]
+
[[Category: Nagata K]]
-
[[Category: Yamamura, A.]]
+
[[Category: Ohtsuka J]]
-
[[Category: dehydrogenase]]
+
[[Category: Okai M]]
-
[[Category: oxidoreductase]]
+
[[Category: Tanokura M]]
-
[[Category: reductase]]
+
[[Category: Yamamura A]]
-
[[Category: sdr]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:17:27 2008''
+

Current revision

Crystal structure of APE0912 from Aeropyrum pernix K1

PDB ID 2z1n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools