This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2zu8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2zu8" [edit=sysop:move=sysop])
Current revision (13:54, 1 November 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2zu8.png|left|200px]]
 
-
{{STRUCTURE_2zu8| PDB=2zu8 | SCENE= }}
+
==Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii==
-
 
+
<StructureSection load='2zu8' size='340' side='right'caption='[[2zu8]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
===Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2zu8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZU8 FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDD:GUANOSINE-5-DIPHOSPHATE-ALPHA-D-MANNOSE'>GDD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[2zu8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zu8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zu8 OCA], [https://pdbe.org/2zu8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zu8 RCSB], [https://www.ebi.ac.uk/pdbsum/2zu8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zu8 ProSAT]</span></td></tr>
-
[[Category: Mannosyl-3-phosphoglycerate synthase]]
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MPGS_PYRHO MPGS_PYRHO] Transfers a mannosyl group from GDP-mannose to phosphoglycerate to form mannosyl-3-phosphoglycerate (MPG). The enzyme is absolutely specific for GDP-mannose and 3-phosphoglycerate, and transfers the mannosyl group with retention of configuration.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zu/2zu8_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zu8 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pyrococcus horikoshii]]
[[Category: Pyrococcus horikoshii]]
-
[[Category: Kawamura, T.]]
+
[[Category: Kawamura T]]
-
[[Category: Tanaka, I.]]
+
[[Category: Tanaka I]]
-
[[Category: Watanabe, N.]]
+
[[Category: Watanabe N]]
-
[[Category: Gdp-mannose]]
+
-
[[Category: Glycosyltransferase]]
+
-
[[Category: Gt-a fold]]
+
-
[[Category: Gt55]]
+
-
[[Category: Magnesium]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii

PDB ID 2zu8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools