This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3a09

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:05, 1 November 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3a09.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with unsaturated trimannuronate==
-
The line below this paragraph, containing "STRUCTURE_3a09", creates the "Structure Box" on the page.
+
<StructureSection load='3a09' size='340' side='right'caption='[[3a09]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3a09]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sphingomonas_sp._A1 Sphingomonas sp. A1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A09 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A09 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEM:BETA-D-MANNURONIC+ACID'>BEM</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAV:ALPHA-D-MANNOPYRANURONIC+ACID'>MAV</scene>, <scene name='pdbligand=MAW:4-DEOXY-ALPHA-L-ERYTHRO-HEX-4-ENOPYRANURONIC+ACID'>MAW</scene></td></tr>
-
{{STRUCTURE_3a09| PDB=3a09 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a09 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a09 OCA], [https://pdbe.org/3a09 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a09 RCSB], [https://www.ebi.ac.uk/pdbsum/3a09 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a09 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with unsaturated trimannuronate===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9KWT6_SPHSX Q9KWT6_SPHSX]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3A09 is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphingomonas Sphingomonas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A09 OCA].
+
Check<jmol>
-
[[Category: Sphingomonas]]
+
<jmolCheckbox>
-
[[Category: Hashimoto, W.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/3a09_consurf.spt"</scriptWhenChecked>
-
[[Category: Itoh, T.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Mikami, B.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Murata, K.]]
+
</jmolCheckbox>
-
[[Category: Alginate]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a09 ConSurf].
-
[[Category: Sugar binding protein]]
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 17 09:38:31 2010''
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Sphingomonas sp. A1]]
 +
[[Category: Hashimoto W]]
 +
[[Category: Itoh T]]
 +
[[Category: Mikami B]]
 +
[[Category: Murata K]]

Current revision

Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with unsaturated trimannuronate

PDB ID 3a09

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3a09"
Personal tools