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3alt

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{{STRUCTURE_3alt| PDB=3alt | SCENE= }}
 
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===Crystal structure of CEL-IV complexed with Melibiose===
 
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{{ABSTRACT_PUBMED_21247895}}
 
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==About this Structure==
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==Crystal structure of CEL-IV complexed with Melibiose==
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[[3alt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cucumaria_echinata Cucumaria echinata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ALT OCA].
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<StructureSection load='3alt' size='340' side='right'caption='[[3alt]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3alt]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Cucumaria_echinata Cucumaria echinata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ALT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ALT FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLA:ALPHA+D-GALACTOSE'>GLA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900037:alpha-melibiose'>PRD_900037</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3alt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3alt OCA], [https://pdbe.org/3alt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3alt RCSB], [https://www.ebi.ac.uk/pdbsum/3alt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3alt ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q7M4F9_CUCEC Q7M4F9_CUCEC]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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CEL-IV is a C-type lectin isolated from a sea cucumber, Cucumaria echinata. This lectin is composed of four identical C-type carbohydrate-recognition domains (CRDs). X-ray crystallographic analysis of CEL-IV revealed that its tetrameric structure was stabilized by multiple interchain disulfide bonds among the subunits. Although CEL-IV has the EPN motif in its carbohydrate-binding sites, which is known to be characteristic of mannose-binding C-type CRDs, it showed preferential binding of galactose and N-acetylgalactosamine. Structural analyses of CEL-IV/melibiose and CEL-IV/raffinose complexes revealed that their galactose residues were recognized in an inverted orientation compared with mannose-binding C-type CRDs containing the EPN motif, by the aid of a stacking interaction with the side chain of Trp79. Changes in the environment of Trp79 induced by binding to galactose were detected by changes in the intrinsic fluorescence and UV-absorption spectra of WT CEL-IV and its site-directed mutants. The binding specificity of CEL-IV toward complex oligosaccharides was analyzed by frontal affinity chromatography using various pyridylamino-sugars, and the results indicated preferential binding to oligosaccharides containing Galbeta1-3/4(Fucalpha1-3/4)GlcNAc structures. These findings suggest that the specificity for oligosaccharides may be largely affected by interactions with amino acid residues in the binding site other than those determining the monosaccharide-specificity.
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==Reference==
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Galactose recognition by a tetrameric C-type lectin, CEL-IV, containing the EPN carbohydrate-recognition motif.,Hatakeyama T, Kamiya T, Kusunoki M, Nakamura-Tsuruta S, Hirabayashi J, Goda S, Unno H J Biol Chem. 2011 Jan 19. PMID:21247895<ref>PMID:21247895</ref>
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<ref group="xtra">PMID:021247895</ref><references group="xtra"/><references/>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3alt" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Cucumaria echinata]]
[[Category: Cucumaria echinata]]
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[[Category: Goda, S.]]
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[[Category: Large Structures]]
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[[Category: Hatakeyama, T.]]
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[[Category: Goda S]]
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[[Category: Hozawa, T.]]
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[[Category: Hatakeyama T]]
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[[Category: Ishii, K.]]
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[[Category: Hozawa T]]
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[[Category: Kamiya, T.]]
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[[Category: Ishii K]]
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[[Category: Kusunoki, M.]]
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[[Category: Kamiya T]]
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[[Category: Unno, H.]]
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[[Category: Kusunoki M]]
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[[Category: C-type lectin]]
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[[Category: Unno H]]
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[[Category: Cel-iv]]
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[[Category: Melibiose]]
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[[Category: Sugar binding protein]]
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Current revision

Crystal structure of CEL-IV complexed with Melibiose

PDB ID 3alt

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