This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dlt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:12, 1 November 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3dlt.jpg|left|200px]]
 
-
<!--
+
==Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism==
-
The line below this paragraph, containing "STRUCTURE_3dlt", creates the "Structure Box" on the page.
+
<StructureSection load='3dlt' size='340' side='right'caption='[[3dlt]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3dlt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacticaseibacillus_rhamnosus_HN001 Lacticaseibacillus rhamnosus HN001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DLT FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BUA:BUTANOIC+ACID'>BUA</scene></td></tr>
-
{{STRUCTURE_3dlt| PDB=3dlt | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dlt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dlt OCA], [https://pdbe.org/3dlt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dlt RCSB], [https://www.ebi.ac.uk/pdbsum/3dlt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dlt ProSAT]</span></td></tr>
-
 
+
</table>
-
===Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/B2CZF3_LACRH B2CZF3_LACRH]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3DLT is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Lactobacillus_rhamnosus Lactobacillus rhamnosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLT OCA].
+
Check<jmol>
-
[[Category: Lactobacillus rhamnosus]]
+
<jmolCheckbox>
-
[[Category: Bennett, M D.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dl/3dlt_consurf.spt"</scriptWhenChecked>
-
[[Category: Delabre, M L.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Holland, R.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Norris, G E.]]
+
</jmolCheckbox>
-
[[Category: Alpha beta hydrolase]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dlt ConSurf].
-
[[Category: Catalytic triad]]
+
<div style="clear:both"></div>
-
[[Category: Esterase]]
+
__TOC__
-
[[Category: Mechanism]]
+
</StructureSection>
-
[[Category: Rotation]]
+
[[Category: Lacticaseibacillus rhamnosus HN001]]
-
 
+
[[Category: Large Structures]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 1 09:36:25 2009''
+
[[Category: Bennett MD]]
 +
[[Category: Delabre M-L]]
 +
[[Category: Holland R]]
 +
[[Category: Norris GE]]

Current revision

Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism

PDB ID 3dlt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3dlt"
Personal tools