This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3drj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:13, 1 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of Lactococcal OppA co-crystallized with pTH-related peptide in an open conformation==
==Crystal structure of Lactococcal OppA co-crystallized with pTH-related peptide in an open conformation==
-
<StructureSection load='3drj' size='340' side='right' caption='[[3drj]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
+
<StructureSection load='3drj' size='340' side='right'caption='[[3drj]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3drj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Laclm Laclm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DRJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3drj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._cremoris_MG1363 Lactococcus lactis subsp. cremoris MG1363]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DRJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DRJ FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3drf|3drf]], [[3drg|3drg]], [[3drh|3drh]], [[3dri|3dri]], [[3drk|3drk]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">oppA, llmg_0701 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=416870 LACLM])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3drj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3drj OCA], [https://pdbe.org/3drj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3drj RCSB], [https://www.ebi.ac.uk/pdbsum/3drj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3drj ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3drj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3drj OCA], [http://pdbe.org/3drj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3drj RCSB], [http://www.ebi.ac.uk/pdbsum/3drj PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A2RJ53_LACLM A2RJ53_LACLM]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dr/3drj_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dr/3drj_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 28: Line 30:
==See Also==
==See Also==
-
*[[Oligopeptide-binding protein|Oligopeptide-binding protein]]
+
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Laclm]]
+
[[Category: Lactococcus lactis subsp. cremoris MG1363]]
-
[[Category: Berntsson, R P.A]]
+
[[Category: Large Structures]]
-
[[Category: Doeven, M K]]
+
[[Category: Berntsson RP-A]]
-
[[Category: Duurkens, R H]]
+
[[Category: Doeven MK]]
-
[[Category: Marrink, S J]]
+
[[Category: Duurkens RH]]
-
[[Category: Poolman, B]]
+
[[Category: Marrink S-J]]
-
[[Category: Sengupta, D]]
+
[[Category: Poolman B]]
-
[[Category: Slotboom, D J]]
+
[[Category: Sengupta D]]
-
[[Category: Thunnissen, A M]]
+
[[Category: Slotboom D-J]]
-
[[Category: Oligo-peptide binding]]
+
[[Category: Thunnissen A-M]]
-
[[Category: Peptide binding protein]]
+
-
[[Category: Venus fly-trap]]
+
-
[[Category: Voluminous binding cavity]]
+

Current revision

Crystal structure of Lactococcal OppA co-crystallized with pTH-related peptide in an open conformation

PDB ID 3drj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3drj"
Personal tools