This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dvr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:14, 1 November 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3dvr.jpg|left|200px]]
 
-
<!--
+
==Proteinase K by LB nanotemplate method after the first step of high X-Ray dose on ESRF ID14-2 beamline==
-
The line below this paragraph, containing "STRUCTURE_3dvr", creates the "Structure Box" on the page.
+
<StructureSection load='3dvr' size='340' side='right'caption='[[3dvr]], [[Resolution|resolution]] 1.02&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3dvr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Parengyodontium_album Parengyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DVR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DVR FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.02&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
{{STRUCTURE_3dvr| PDB=3dvr | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dvr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dvr OCA], [https://pdbe.org/3dvr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dvr RCSB], [https://www.ebi.ac.uk/pdbsum/3dvr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dvr ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PRTK_PARAQ PRTK_PARAQ] Hydrolyzes keratin at aromatic and hydrophobic residues.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/3dvr_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dvr ConSurf].
 +
<div style="clear:both"></div>
-
===Proteinase K by LB nanotemplate method after the first step of high X-Ray dose on ESRF ID14-2 beamline===
+
==See Also==
-
 
+
*[[Proteinase 3D structures|Proteinase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3DVR is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DVR OCA].
+
[[Category: Large Structures]]
-
[[Category: Engyodontium album]]
+
[[Category: Parengyodontium album]]
-
[[Category: Peptidase K]]
+
[[Category: Nicolini C]]
-
[[Category: Nicolini, C.]]
+
[[Category: Pechkova E]]
-
[[Category: Pechkova, E.]]
+
[[Category: Tripathi SK]]
-
[[Category: Tripathi, S K.]]
+
-
[[Category: Alpha and beta protein]]
+
-
[[Category: Calcium]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Protease]]
+
-
[[Category: Serine protease]]
+
-
[[Category: Zymogen]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 8 12:39:34 2009''
+

Current revision

Proteinase K by LB nanotemplate method after the first step of high X-Ray dose on ESRF ID14-2 beamline

PDB ID 3dvr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools