This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3dyi
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 3dyi is ON HOLD until Paper Publication Authors: Bennett, M.D., Delabre, M.-L., Holland, R., Norris, G.E. Description: Snapshots of esterase D from...) |
|||
| (7 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism== | |
| - | + | <StructureSection load='3dyi' size='340' side='right'caption='[[3dyi]], [[Resolution|resolution]] 1.72Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3dyi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacticaseibacillus_rhamnosus_HN001 Lacticaseibacillus rhamnosus HN001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DYI FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.72Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr> | |
| - | '' | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dyi OCA], [https://pdbe.org/3dyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dyi RCSB], [https://www.ebi.ac.uk/pdbsum/3dyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dyi ProSAT]</span></td></tr> |
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/B2CZF3_LACRH B2CZF3_LACRH] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dy/3dyi_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dyi ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Lacticaseibacillus rhamnosus HN001]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Bennett MD]] | ||
| + | [[Category: Delabre M-L]] | ||
| + | [[Category: Holland R]] | ||
| + | [[Category: Norris GE]] | ||
Current revision
Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism
| |||||||||||
