3gjf

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{{Seed}}
 
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[[Image:3gjf.png|left|200px]]
 
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==Rational development of high-affinity T-cell receptor-like antibodies==
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The line below this paragraph, containing "STRUCTURE_3gjf", creates the "Structure Box" on the page.
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<StructureSection load='3gjf' size='340' side='right'caption='[[3gjf]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3gjf]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GJF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GJF FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gjf OCA], [https://pdbe.org/3gjf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gjf RCSB], [https://www.ebi.ac.uk/pdbsum/3gjf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gjf ProSAT]</span></td></tr>
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{{STRUCTURE_3gjf| PDB=3gjf | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CTG1B_HUMAN CTG1B_HUMAN]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gj/3gjf_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gjf ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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T-cell interaction with a target cell is a key event in the adaptive immune response and primarily driven by T-cell receptor (TCR) recognition of peptide-MHC (pMHC) complexes. TCR avidity for a given pMHC is determined by number of MHC molecules, availability of coreceptors, and TCR affinity for MHC or peptide, respectively, with peptide recognition being the most important factor to confer target specificity. Here we present high-resolution crystal structures of 2 Fab antibodies in complex with the immunodominant NY-ESO-1(157-165) peptide analogue (SLLMWITQV) presented by HLA-A*0201 and compare them with a TCR recognizing the same pMHC. Binding to the central methionine-tryptophan peptide motif and orientation of binding were almost identical for Fabs and TCR. As the MW "peg" dominates the contacts between Fab and peptide, we estimated the contributions of individual amino acids between the Fab and peptide to provide the rational basis for a peptide-focused second-generation, high-affinity antibody library. The final Fab candidate achieved better peptide binding by 2 light-chain mutations, giving a 20-fold affinity improvement to 2-4 nM, exceeding the affinity of the TCR by 1,000-fold. The high-affinity Fab when grafted as recombinant TCR on T cells conferred specific killing of HLA-A*0201/NY-ESO-1(157-165) target cells. In summary, we prove that affinity maturation of antibodies mimicking a TCR is possible and provide a strategy for engineering high-affinity antibodies that can be used in targeting specific pMHC complexes for diagnostic and therapeutic purposes.
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===Rational development of high-affinity T-cell receptor-like antibodies===
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Rational development of high-affinity T-cell receptor-like antibodies.,Stewart-Jones G, Wadle A, Hombach A, Shenderov E, Held G, Fischer E, Kleber S, Stenner-Liewen F, Bauer S, McMichael A, Knuth A, Abken H, Hombach AA, Cerundolo V, Jones EY, Renner C Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5784-8. Epub 2009 Mar 23. PMID:19307587<ref>PMID:19307587</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3gjf" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_19307587}}, adds the Publication Abstract to the page
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*[[Antibody 3D structures|Antibody 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19307587 is the PubMed ID number.
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*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
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*[[MHC 3D structures|MHC 3D structures]]
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{{ABSTRACT_PUBMED_19307587}}
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*[[MHC I 3D structures|MHC I 3D structures]]
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*[[3D structures of human antibody|3D structures of human antibody]]
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==About this Structure==
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== References ==
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3GJF is a 10 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GJF OCA].
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<references/>
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__TOC__
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==Reference==
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</StructureSection>
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<ref group="xtra">PMID:19307587</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Abken, H.]]
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[[Category: Large Structures]]
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[[Category: Bauer, S.]]
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[[Category: Abken H]]
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[[Category: Cerundolo, V.]]
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[[Category: Bauer S]]
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[[Category: Fischer, E.]]
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[[Category: Cerundolo V]]
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[[Category: Held, G.]]
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[[Category: Fischer E]]
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[[Category: Hombach, A.]]
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[[Category: Held G]]
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[[Category: Hombach, A A.]]
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[[Category: Hombach A]]
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[[Category: Jones, E Y.]]
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[[Category: Hombach AA]]
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[[Category: Kleber, S.]]
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[[Category: Jones EY]]
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[[Category: Knuth, A.]]
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[[Category: Kleber S]]
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[[Category: McMichael, A.]]
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[[Category: Knuth A]]
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[[Category: Renner, C.]]
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[[Category: McMichael A]]
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[[Category: Shenderov, E.]]
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[[Category: Renner C]]
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[[Category: Stenner-Liewen, F.]]
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[[Category: Shenderov E]]
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[[Category: Stewart-Jones, G.]]
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[[Category: Stenner-Liewen F]]
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[[Category: Wadle, A.]]
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[[Category: Stewart-Jones G]]
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[[Category: Antibody]]
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[[Category: Wadle A]]
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[[Category: Disease mutation]]
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[[Category: Disulfide bond]]
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[[Category: Glycation]]
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[[Category: Glycoprotein]]
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[[Category: Host-virus interaction]]
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[[Category: Immune response]]
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[[Category: Immune system]]
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[[Category: Immunoglobulin domain]]
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[[Category: Membrane]]
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[[Category: Mhc]]
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[[Category: Mhc i]]
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[[Category: Peptide]]
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[[Category: Phosphoprotein]]
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[[Category: Polymorphism]]
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[[Category: Pyrrolidone carboxylic acid]]
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[[Category: Secreted]]
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[[Category: Transmembrane]]
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[[Category: Ubl conjugation]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 6 10:47:53 2009''
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Current revision

Rational development of high-affinity T-cell receptor-like antibodies

PDB ID 3gjf

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