This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gvy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:45, 1 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of bacterioferritin from R.sphaeroides==
==Crystal structure of bacterioferritin from R.sphaeroides==
-
<StructureSection load='3gvy' size='340' side='right' caption='[[3gvy]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+
<StructureSection load='3gvy' size='340' side='right'caption='[[3gvy]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GVY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides_2.4.1 Cereibacter sphaeroides 2.4.1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GVY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvy OCA], [http://pdbe.org/3gvy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gvy RCSB], [http://www.ebi.ac.uk/pdbsum/3gvy PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvy OCA], [https://pdbe.org/3gvy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gvy RCSB], [https://www.ebi.ac.uk/pdbsum/3gvy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvy ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/Q3J696_RHOS4 Q3J696_RHOS4]] Iron-storage protein (By similarity).[RuleBase:RU000623] Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex (By similarity).[PIRNR:PIRNR002560]
+
[https://www.uniprot.org/uniprot/Q3J696_CERS4 Q3J696_CERS4] Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex.[PIRNR:PIRNR002560]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gv/3gvy_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gv/3gvy_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 29: Line 31:
==See Also==
==See Also==
-
*[[Ferritin|Ferritin]]
+
*[[Ferritin 3D structures|Ferritin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Rhodobacter sphaeroides]]
+
[[Category: Cereibacter sphaeroides 2 4.1]]
-
[[Category: Hwang, K Y]]
+
[[Category: Large Structures]]
-
[[Category: Nam, K H]]
+
[[Category: Hwang KY]]
-
[[Category: Bacterioferritin]]
+
[[Category: Nam KH]]
-
[[Category: Di-iron]]
+
-
[[Category: Ferritin]]
+
-
[[Category: Ferroxidase activity]]
+
-
[[Category: Heme]]
+
-
[[Category: Iron storage]]
+
-
[[Category: Metal binding protein]]
+

Current revision

Crystal structure of bacterioferritin from R.sphaeroides

PDB ID 3gvy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3gvy"
Personal tools