3gzc
From Proteopedia
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==Structure of human selenocysteine lyase== | ==Structure of human selenocysteine lyase== | ||
- | <StructureSection load='3gzc' size='340' side='right' caption='[[3gzc]], [[Resolution|resolution]] 2.10Å' scene=''> | + | <StructureSection load='3gzc' size='340' side='right'caption='[[3gzc]], [[Resolution|resolution]] 2.10Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[3gzc]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3gzc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2hdy 2hdy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GZC FirstGlance]. <br> |
- | </td></tr><tr><td class="sblockLbl"><b>[[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLR:(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL+DIHYDROGEN+PHOSPHATE'>PLR</scene></td></tr> | |
- | <tr><td class="sblockLbl"><b> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gzc OCA], [https://pdbe.org/3gzc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gzc RCSB], [https://www.ebi.ac.uk/pdbsum/3gzc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gzc ProSAT]</span></td></tr> |
- | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </table> |
- | <table> | + | == Function == |
+ | [https://www.uniprot.org/uniprot/SCLY_HUMAN SCLY_HUMAN] Catalyzes the decomposition of L-selenocysteine to L-alanine and elemental selenium (By similarity). | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
- | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gz/3gzc_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gz/3gzc_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
- | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gzc ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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Biochemical discrimination between selenium and sulfur 1: a single residue provides selenium specificity to human selenocysteine lyase.,Collins R, Johansson AL, Karlberg T, Markova N, van den Berg S, Olesen K, Hammarstrom M, Flores A, Schuler H, Schiavone LH, Brzezinski P, Arner ES, Hogbom M PLoS One. 2012;7(1):e30581. Epub 2012 Jan 25. PMID:22295093<ref>PMID:22295093</ref> | Biochemical discrimination between selenium and sulfur 1: a single residue provides selenium specificity to human selenocysteine lyase.,Collins R, Johansson AL, Karlberg T, Markova N, van den Berg S, Olesen K, Hammarstrom M, Flores A, Schuler H, Schiavone LH, Brzezinski P, Arner ES, Hogbom M PLoS One. 2012;7(1):e30581. Epub 2012 Jan 25. PMID:22295093<ref>PMID:22295093</ref> | ||
- | From | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
</div> | </div> | ||
+ | <div class="pdbe-citations 3gzc" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Selenocysteine lyase|Selenocysteine lyase]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: Arrowsmith | + | [[Category: Arrowsmith C]] |
- | + | [[Category: Berglund H]] | |
- | [[Category: Berglund | + | [[Category: Collins R]] |
- | [[Category: Collins | + | [[Category: Edwards A]] |
- | [[Category: Edwards | + | [[Category: Ehn M]] |
- | [[Category: Ehn | + | [[Category: Flodin S]] |
- | [[Category: Flodin | + | [[Category: Flores A]] |
- | [[Category: Flores | + | [[Category: Graslund S]] |
- | [[Category: Graslund | + | [[Category: Hallberg BM]] |
- | [[Category: Hallberg | + | [[Category: Hammarstrom M]] |
- | [[Category: Hammarstrom | + | [[Category: Hogbom M]] |
- | [[Category: Hogbom | + | [[Category: Holmberg-Schiavone L]] |
- | [[Category: Holmberg-Schiavone | + | [[Category: Karlberg T]] |
- | [[Category: Karlberg | + | [[Category: Kotenyova T]] |
- | [[Category: Kotenyova | + | [[Category: Nilsson-Ehle P]] |
- | [[Category: Nilsson-Ehle | + | [[Category: Nordlund P]] |
- | [[Category: Nordlund | + | [[Category: Nyman T]] |
- | [[Category: Nyman | + | [[Category: Ogg D]] |
- | [[Category: Ogg | + | [[Category: Persson C]] |
- | [[Category: Persson | + | [[Category: Sagemark J]] |
- | + | [[Category: Schuler H]] | |
- | [[Category: Sagemark | + | [[Category: Stenmark P]] |
- | [[Category: Schuler | + | [[Category: Sundstrom M]] |
- | [[Category: Stenmark | + | [[Category: Thorsell AG]] |
- | [[Category: Sundstrom | + | [[Category: Uppenberg J]] |
- | [[Category: Thorsell | + | [[Category: Van Den Berg S]] |
- | [[Category: Uppenberg | + | [[Category: Weigelt J]] |
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Current revision
Structure of human selenocysteine lyase
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Categories: Homo sapiens | Large Structures | Arrowsmith C | Berglund H | Collins R | Edwards A | Ehn M | Flodin S | Flores A | Graslund S | Hallberg BM | Hammarstrom M | Hogbom M | Holmberg-Schiavone L | Karlberg T | Kotenyova T | Nilsson-Ehle P | Nordlund P | Nyman T | Ogg D | Persson C | Sagemark J | Schuler H | Stenmark P | Sundstrom M | Thorsell AG | Uppenberg J | Van Den Berg S | Weigelt J