This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gzy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:46, 1 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal Structure of the Biphenyl Dioxygenase from Comamonas testosteroni Sp. Strain B-356==
==Crystal Structure of the Biphenyl Dioxygenase from Comamonas testosteroni Sp. Strain B-356==
-
<StructureSection load='3gzy' size='340' side='right' caption='[[3gzy]], [[Resolution|resolution]] 1.62&Aring;' scene=''>
+
<StructureSection load='3gzy' size='340' side='right'caption='[[3gzy]], [[Resolution|resolution]] 1.62&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3gzy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_11996 Atcc 11996]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GZY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3gzy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Comamonas_testosteroni Comamonas testosteroni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GZY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.62&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3gzx|3gzx]], [[3gzz|3gzz]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bphA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=285 ATCC 11996]), bphE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=285 ATCC 11996])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gzy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gzy OCA], [https://pdbe.org/3gzy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gzy RCSB], [https://www.ebi.ac.uk/pdbsum/3gzy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gzy ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Biphenyl_2,3-dioxygenase Biphenyl 2,3-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.12.18 1.14.12.18] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gzy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gzy OCA], [http://pdbe.org/3gzy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gzy RCSB], [http://www.ebi.ac.uk/pdbsum/3gzy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gzy ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/BPHE_COMTE BPHE_COMTE]] The beta subunit may be responsible for the substrate specificity of the enzyme.
+
[https://www.uniprot.org/uniprot/BPHA_COMTE BPHA_COMTE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gz/3gzy_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gz/3gzy_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 33: Line 31:
==See Also==
==See Also==
-
*[[Dioxygenase|Dioxygenase]]
+
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 11996]]
+
[[Category: Comamonas testosteroni]]
-
[[Category: Biphenyl 2,3-dioxygenase]]
+
[[Category: Large Structures]]
-
[[Category: Bolin, J T]]
+
[[Category: Bolin JT]]
-
[[Category: Colbert, C L]]
+
[[Category: Colbert CL]]
-
[[Category: Kumar, P]]
+
[[Category: Kumar P]]
-
[[Category: Aromatic hydrocarbons catabolism]]
+
-
[[Category: Dioxygenase]]
+
-
[[Category: Iron]]
+
-
[[Category: Iron-sulfur]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Nad]]
+
-
[[Category: Non-heme iron]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Rieskie]]
+

Current revision

Crystal Structure of the Biphenyl Dioxygenase from Comamonas testosteroni Sp. Strain B-356

PDB ID 3gzy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3gzy"
Personal tools