This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3icp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:57, 1 November 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3icp.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of UDP-galactose 4-epimerase==
-
The line below this paragraph, containing "STRUCTURE_3icp", creates the "Structure Box" on the page.
+
<StructureSection load='3icp' size='340' side='right'caption='[[3icp]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3icp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrobaculum_calidifontis_JCM_11548 Pyrobaculum calidifontis JCM 11548]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ICP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ICP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.01&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
{{STRUCTURE_3icp| PDB=3icp | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3icp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3icp OCA], [https://pdbe.org/3icp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3icp RCSB], [https://www.ebi.ac.uk/pdbsum/3icp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3icp ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A3MUJ4_PYRCJ A3MUJ4_PYRCJ]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/3icp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3icp ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of UDP-galactose 4-epimerase===
+
==See Also==
-
 
+
*[[UDP-galactose 4-epimerase|UDP-galactose 4-epimerase]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3ICP is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrobaculum_calidifontis Pyrobaculum calidifontis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ICP OCA].
+
[[Category: Large Structures]]
-
[[Category: Pyrobaculum calidifontis]]
+
[[Category: Pyrobaculum calidifontis JCM 11548]]
-
[[Category: Kawai, T.]]
+
[[Category: Kawai T]]
-
[[Category: Ohshima, T.]]
+
[[Category: Ohshima T]]
-
[[Category: Sakuraba, H.]]
+
[[Category: Sakuraba H]]
-
[[Category: Yoneda, K.]]
+
[[Category: Yoneda K]]
-
[[Category: Isomerase]]
+
-
[[Category: Rossmann fold]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 21 10:16:26 2010''
+

Current revision

Crystal Structure of UDP-galactose 4-epimerase

PDB ID 3icp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools