This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3itx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:03, 1 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Mn2+ bound form of Pseudomonas stutzeri L-rhamnose isomerase==
==Mn2+ bound form of Pseudomonas stutzeri L-rhamnose isomerase==
-
<StructureSection load='3itx' size='340' side='right' caption='[[3itx]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='3itx' size='340' side='right'caption='[[3itx]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3itx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_sewerinii"_bergey_et_al._1923 "achromobacter sewerinii" bergey et al. 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ITX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ITX FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3itx]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ITX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ITX FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2hcv|2hcv]], [[2i56|2i56]], [[2i57|2i57]], [[3itl|3itl]], [[3ito|3ito]], [[3itt|3itt]], [[3itv|3itv]], [[3ity|3ity]], [[3iud|3iud]], [[3iuh|3iuh]], [[3iui|3iui]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-rhamnose_isomerase L-rhamnose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.14 5.3.1.14] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3itx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3itx OCA], [https://pdbe.org/3itx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3itx RCSB], [https://www.ebi.ac.uk/pdbsum/3itx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3itx ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3itx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3itx OCA], [http://pdbe.org/3itx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3itx RCSB], [http://www.ebi.ac.uk/pdbsum/3itx PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q75WH8_STUST Q75WH8_STUST]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/it/3itx_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/it/3itx_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 34: Line 36:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Achromobacter sewerinii bergey et al. 1923]]
+
[[Category: Large Structures]]
-
[[Category: L-rhamnose isomerase]]
+
[[Category: Pseudomonas stutzeri]]
-
[[Category: Ishii, T]]
+
[[Category: Ishii T]]
-
[[Category: Izumori, K]]
+
[[Category: Izumori K]]
-
[[Category: Kamitori, S]]
+
[[Category: Kamitori S]]
-
[[Category: Yamaji, M]]
+
[[Category: Yamaji M]]
-
[[Category: Yoshida, H]]
+
[[Category: Yoshida H]]
-
[[Category: Beta/alpha barrel]]
+
-
[[Category: Homo-tetramer]]
+
-
[[Category: Isomerase]]
+
-
[[Category: Metal-binding protein]]
+
-
[[Category: Tim barrel]]
+

Current revision

Mn2+ bound form of Pseudomonas stutzeri L-rhamnose isomerase

PDB ID 3itx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3itx"
Personal tools