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| | ==Crystal structure of aminoaldehyde dehydrogenase 1 from Pisum sativum (PsAMADH1)== | | ==Crystal structure of aminoaldehyde dehydrogenase 1 from Pisum sativum (PsAMADH1)== |
| - | <StructureSection load='3iwk' size='340' side='right' caption='[[3iwk]], [[Resolution|resolution]] 2.40Å' scene=''> | + | <StructureSection load='3iwk' size='340' side='right'caption='[[3iwk]], [[Resolution|resolution]] 2.40Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3iwk]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Garden_pea Garden pea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IWK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IWK FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3iwk]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IWK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IWK FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3iwj|3iwj]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">amadh1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3888 Garden pea])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iwk OCA], [https://pdbe.org/3iwk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iwk RCSB], [https://www.ebi.ac.uk/pdbsum/3iwk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iwk ProSAT]</span></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aminobutyraldehyde_dehydrogenase Aminobutyraldehyde dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.19 1.2.1.19] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3iwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iwk OCA], [http://pdbe.org/3iwk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3iwk RCSB], [http://www.ebi.ac.uk/pdbsum/3iwk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3iwk ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/AADH1_PEA AADH1_PEA] Dehydrogenase that catalyzes the oxidation of several aminoaldehydes (PubMed:20026072). Metabolizes and detoxifies aldehyde products of polyamine degradation to non-toxic amino acids (Probable). Catalyzes the oxidation of 3-aminopropanal to beta-alanine (Ref.1, PubMed:20026072). Catalyzes the oxidation of 4-aminobutanal to 4-aminobutanoate (PubMed:20026072). Catalyzes the oxidation of 4-guanidinobutanal to 4-guanidinobutanoate (PubMed:20026072).<ref>PMID:20026072</ref> [UniProtKB:P20000] |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | ==See Also== | | ==See Also== |
| - | *[[Aldehyde dehydrogenase|Aldehyde dehydrogenase]] | + | *[[Aldehyde dehydrogenase 3D structures|Aldehyde dehydrogenase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Aminobutyraldehyde dehydrogenase]] | + | [[Category: Large Structures]] |
| - | [[Category: Garden pea]] | + | [[Category: Pisum sativum]] |
| - | [[Category: Briozzo, P]] | + | [[Category: Briozzo P]] |
| - | [[Category: Kopecny, D]] | + | [[Category: Kopecny D]] |
| - | [[Category: Morera, S]] | + | [[Category: Morera S]] |
| - | [[Category: Aminoaldehyde dehydrogenase]]
| + | |
| - | [[Category: Betaine aldehyde dehydrogenase]]
| + | |
| - | [[Category: Dimer]]
| + | |
| - | [[Category: Nad]]
| + | |
| - | [[Category: Oxidoreductase]]
| + | |
| - | [[Category: Rossmann fold]]
| + | |
| Structural highlights
Function
AADH1_PEA Dehydrogenase that catalyzes the oxidation of several aminoaldehydes (PubMed:20026072). Metabolizes and detoxifies aldehyde products of polyamine degradation to non-toxic amino acids (Probable). Catalyzes the oxidation of 3-aminopropanal to beta-alanine (Ref.1, PubMed:20026072). Catalyzes the oxidation of 4-aminobutanal to 4-aminobutanoate (PubMed:20026072). Catalyzes the oxidation of 4-guanidinobutanal to 4-guanidinobutanoate (PubMed:20026072).[1] [UniProtKB:P20000]
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Aminoaldehyde dehydrogenases (AMADHs, EC 1.2.1.19) belong to the large aldehyde dehydrogenase (ALDH) superfamily, namely, the ALDH9 family. They oxidize polyamine-derived omega-aminoaldehydes to the corresponding omega-amino acids. Here, we report the first X-ray structures of plant AMADHs: two isoenzymes, PsAMADH1 and PsAMADH2, from Pisum sativum in complex with beta-nicotinamide adenine dinucleotide (NAD(+)) at 2.4 and 2.15 A resolution, respectively. Both recombinant proteins are dimeric and, similarly to other ALDHs, each monomer is composed of an oligomerization domain, a coenzyme binding domain and a catalytic domain. Each subunit binds NAD(+) as a coenzyme, contains a solvent-accessible C-terminal peroxisomal targeting signal (type 1) and a cation bound in the cavity close to the NAD(+) binding site. While the NAD(+) binding mode is classical for PsAMADH2, that for PsAMADH1 is unusual among ALDHs. A glycerol molecule occupies the substrate binding site and mimics a bound substrate. Structural analysis and substrate specificity study of both isoenzymes in combination with data published previously on other ALDH9 family members show that the established categorization of such enzymes into distinct groups based on substrate specificity is no more appropriate, because many of them seem capable of oxidizing a large spectrum of aminoaldehyde substrates. PsAMADH1 and PsAMADH2 can oxidize N,N,N-trimethyl-4-aminobutyraldehyde into gamma-butyrobetaine, which is the carnitine precursor in animal cells. This activity highly suggests that in addition to their contribution to the formation of compatible osmolytes such as glycine betaine, beta-alanine betaine and gamma-aminobutyric acid, AMADHs might participate in carnitine biosynthesis in plants.
Structural and functional characterization of plant aminoaldehyde dehydrogenase from Pisum sativum with a broad specificity for natural and synthetic aminoaldehydes.,Tylichova M, Kopecny D, Morera S, Briozzo P, Lenobel R, Snegaroff J, Sebela M J Mol Biol. 2010 Mar 5;396(4):870-82. Epub 2009 Dec 21. PMID:20026072[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Tylichova M, Kopecny D, Morera S, Briozzo P, Lenobel R, Snegaroff J, Sebela M. Structural and functional characterization of plant aminoaldehyde dehydrogenase from Pisum sativum with a broad specificity for natural and synthetic aminoaldehydes. J Mol Biol. 2010 Mar 5;396(4):870-82. Epub 2009 Dec 21. PMID:20026072 doi:10.1016/j.jmb.2009.12.015
- ↑ Tylichova M, Kopecny D, Morera S, Briozzo P, Lenobel R, Snegaroff J, Sebela M. Structural and functional characterization of plant aminoaldehyde dehydrogenase from Pisum sativum with a broad specificity for natural and synthetic aminoaldehydes. J Mol Biol. 2010 Mar 5;396(4):870-82. Epub 2009 Dec 21. PMID:20026072 doi:10.1016/j.jmb.2009.12.015
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