This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ked

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3ked" [edit=sysop:move=sysop])
Current revision (16:11, 1 November 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ked.png|left|200px]]
 
-
<!--
+
==Crystal structure of Aminopeptidase N in complex with 2,4-diaminobutyric acid==
-
The line below this paragraph, containing "STRUCTURE_3ked", creates the "Structure Box" on the page.
+
<StructureSection load='3ked' size='340' side='right'caption='[[3ked]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3ked]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KED OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KED FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DAB:2,4-DIAMINOBUTYRIC+ACID'>DAB</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_3ked| PDB=3ked | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ked FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ked OCA], [https://pdbe.org/3ked PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ked RCSB], [https://www.ebi.ac.uk/pdbsum/3ked PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ked ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of Aminopeptidase N in complex with 2,4-diaminobutyric acid===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/AMPN_ECOLI AMPN_ECOLI] Aminopeptidase N is involved in the degradation of intracellular peptides generated by protein breakdown during normal growth as well as in response to nutrient starvation.
-
 
+
-
==About this Structure==
+
-
[[3ked]] is a 1 chain structure of [[Aminopeptidase]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KED OCA].
+
==See Also==
==See Also==
-
*[[Aminopeptidase]]
+
*[[Aminopeptidase 3D structures|Aminopeptidase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:022025387</ref><references group="xtra"/>
+
[[Category: Escherichia coli K-12]]
-
[[Category: Escherichia coli]]
+
[[Category: Large Structures]]
-
[[Category: Membrane alanyl aminopeptidase]]
+
[[Category: Addlagatta A]]
-
[[Category: Addlagatta, A.]]
+
[[Category: Gumpena R]]
-
[[Category: Gumpena, R.]]
+
-
[[Category: Amino switch]]
+
-
[[Category: Aminopeptidase]]
+
-
[[Category: Cell inner membrane]]
+
-
[[Category: Cell membrane]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Inhibitor]]
+
-
[[Category: Ligand design]]
+
-
[[Category: Membrane]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Metalloprotease]]
+
-
[[Category: Protease]]
+
-
[[Category: Thermolysin like active site]]
+

Current revision

Crystal structure of Aminopeptidase N in complex with 2,4-diaminobutyric acid

PDB ID 3ked

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools