This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3khx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:12, 1 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of Staphylococcus aureus metallopeptidase (Sapep/DapE) in the apo-form==
==Crystal structure of Staphylococcus aureus metallopeptidase (Sapep/DapE) in the apo-form==
-
<StructureSection load='3khx' size='340' side='right' caption='[[3khx]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
<StructureSection load='3khx' size='340' side='right'caption='[[3khx]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3khx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staac Staac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KHX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KHX FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3khx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_COL Staphylococcus aureus subsp. aureus COL]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KHX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KHX FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3khz|3khz]], [[3ki9|3ki9]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dipeptidase PepV(SACOL1801) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=93062 STAAC])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3khx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3khx OCA], [https://pdbe.org/3khx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3khx RCSB], [https://www.ebi.ac.uk/pdbsum/3khx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3khx ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3khx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3khx OCA], [http://pdbe.org/3khx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3khx RCSB], [http://www.ebi.ac.uk/pdbsum/3khx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3khx ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PEPVL_STAAC PEPVL_STAAC]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kh/3khx_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kh/3khx_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 31: Line 32:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Staac]]
+
[[Category: Large Structures]]
-
[[Category: Girish, T S]]
+
[[Category: Staphylococcus aureus subsp. aureus COL]]
-
[[Category: Gopal, B]]
+
[[Category: Girish TS]]
-
[[Category: Dape]]
+
[[Category: Gopal B]]
-
[[Category: Dipeptidase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Metallopeptidase]]
+
-
[[Category: Metalloprotease]]
+
-
[[Category: Protease]]
+

Current revision

Crystal structure of Staphylococcus aureus metallopeptidase (Sapep/DapE) in the apo-form

PDB ID 3khx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools