This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kko

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:13, 1 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of M-Ras P40D/D41E/L51R in complex with GppNHp==
==Crystal structure of M-Ras P40D/D41E/L51R in complex with GppNHp==
-
<StructureSection load='3kko' size='340' side='right' caption='[[3kko]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='3kko' size='340' side='right'caption='[[3kko]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3kko]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KKO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KKO FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3kko]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KKO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KKO FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1x1s|1x1s]], [[1x1r|1x1r]], [[3kkm|3kkm]], [[3kkn|3kkn]], [[3kkp|3kkp]], [[3kkq|3kkq]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kko FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kko OCA], [http://pdbe.org/3kko PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kko RCSB], [http://www.ebi.ac.uk/pdbsum/3kko PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kko ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kko FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kko OCA], [https://pdbe.org/3kko PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kko RCSB], [https://www.ebi.ac.uk/pdbsum/3kko PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kko ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RASM_MOUSE RASM_MOUSE]] May serve as an important signal transducer for a novel upstream stimuli in controlling cell proliferation. Weakly activates the MAP kinase pathway (By similarity).
+
[https://www.uniprot.org/uniprot/RASM_MOUSE RASM_MOUSE] May serve as an important signal transducer for a novel upstream stimuli in controlling cell proliferation. Weakly activates the MAP kinase pathway (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/3kko_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/3kko_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 33: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Lk3 transgenic mice]]
+
[[Category: Large Structures]]
-
[[Category: Ijiri, Y]]
+
[[Category: Mus musculus]]
-
[[Category: Inoue, T]]
+
[[Category: Ijiri Y]]
-
[[Category: Kataoka, T]]
+
[[Category: Inoue T]]
-
[[Category: Liao, J]]
+
[[Category: Kataoka T]]
-
[[Category: Matsumoto, K]]
+
[[Category: Liao J]]
-
[[Category: Muraoka, S]]
+
[[Category: Matsumoto K]]
-
[[Category: Shima, F]]
+
[[Category: Muraoka S]]
-
[[Category: Ye, M]]
+
[[Category: Shima F]]
-
[[Category: Gtp-binding]]
+
[[Category: Ye M]]
-
[[Category: Gtpase]]
+
-
[[Category: Signaling protein]]
+

Current revision

Crystal structure of M-Ras P40D/D41E/L51R in complex with GppNHp

PDB ID 3kko

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools