3miv

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(New page: '''Unreleased structure''' The entry 3miv is ON HOLD Authors: Sharma, A., Vijayan, M. Description: Structure of Banana lectin -Glc-alpha(1,2)-Glc complex ''Page seeded by [http://oca....)
Current revision (16:34, 1 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 3miv is ON HOLD
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==Structure of Banana lectin - Glc-alpha(1,2)-Glc complex==
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<StructureSection load='3miv' size='340' side='right'caption='[[3miv]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3miv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Musa_acuminata Musa acuminata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MIV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MIV FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3miv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3miv OCA], [https://pdbe.org/3miv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3miv RCSB], [https://www.ebi.ac.uk/pdbsum/3miv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3miv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q8L5H4_MUSAC Q8L5H4_MUSAC]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mi/3miv_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3miv ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The three crystal structures reported here provide details of the interactions of mannose and the mannosyl-alpha-1,3-mannose component of a pentamannose with banana lectin and evidence for the binding of glucosyl-alpha-1,2-glucose to the lectin. The known structures involving the lectin include a complex with glucosyl-beta-1,3-glucose. Modelling studies on the three disaccharide complexes with the reducing end and the non-reducing end at the primary binding site are also provided here. The results of the X-ray and modelling studies show that the disaccharides with an alpha-1,3 linkage prefer to have the non-reducing end at the primary binding site while the reducing end is preferred at the site when the linkage is beta-1,3 in mannose/glucose specific beta-prism I fold lectins. In the corresponding galactose-specific lectins, however, alpha-1,3 linked disaccharides cannot bind the lectin with the non-reducing end at the primary binding site on account of steric clashes with an aromatic residue which occurs only when the lectin is galactose-specific. Molecular dynamics simulations based on the known structures involving banana lectin enrich the information on lectin-carbohydrate interactions obtained from crystal structures. They demonstrate that conformational selection as well as induced fit operate when carbohydrates bind to banana lectin.
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Authors: Sharma, A., Vijayan, M.
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Influence of glycosidic linkage on the nature of carbohydrate binding in {beta}-prism I fold lectins. An X-ray and molecular dynamics investigation on banana lectin - carbohydrate complexes.,Sharma A, Vijayan M Glycobiology. 2010 Aug 20. PMID:20729346<ref>PMID:20729346</ref>
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Description: Structure of Banana lectin -Glc-alpha(1,2)-Glc complex
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 21 09:38:44 2010''
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<div class="pdbe-citations 3miv" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Musa acuminata]]
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[[Category: Sharma A]]
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[[Category: Vijayan M]]

Current revision

Structure of Banana lectin - Glc-alpha(1,2)-Glc complex

PDB ID 3miv

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