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3mwm

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Graded expression of zinc-responsive genes through two regulatory zinc-binding sites in Zur

Structural highlights

3mwm is a 2 chain structure with sequence from Streptomyces coelicolor. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.4Å
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q9L2H5_STRCO

Publication Abstract from PubMed

Zinc is one of the essential transition metals in cells. Excess or lack of zinc is detrimental, and cells exploit highly sensitive zinc-binding regulators to achieve homeostasis. In this article, we present a crystal structure of active Zur from Streptomyces coelicolor with three zinc-binding sites (C-, M-, and D-sites). Mutations of the three sites differentially affected sporulation and transcription of target genes, such that C- and M-site mutations inhibited sporulation and derepressed all target genes examined, whereas D-site mutations did not affect sporulation and derepressed only a sensitive gene. Biochemical and spectroscopic analyses of representative metal site mutants revealed that the C-site serves a structural role, whereas the M- and D-sites regulate DNA-binding activity as an on-off switch and a fine-tuner, respectively. Consistent with differential effect of mutations on target genes, zinc chelation by TPEN derepressed some genes (znuA, rpmF2) more sensitively than others (rpmG2, SCO7682) in vivo. Similar pattern of TPEN-sensitivity was observed for Zur-DNA complexes formed on different promoters in vitro. The sensitive promoters bound Zur with lower affinity than the less sensitive ones. EDTA-treated apo-Zur gained its DNA binding activity at different concentrations of added zinc for the two promoter groups, corresponding to free zinc concentrations of 4.5x10(-16) M and 7.9x10(-16) M for the less sensitive and sensitive promoters, respectively. The graded expression of target genes is a clever outcome of subtly modulating Zur-DNA binding affinities in response to zinc availability. It enables bacteria to detect metal depletion with improved sensitivity and optimize gene-expression pattern.

Graded expression of zinc-responsive genes through two regulatory zinc-binding sites in Zur.,Shin JH, Jung HJ, An YJ, Cho YB, Cha SS, Roe JH Proc Natl Acad Sci U S A. 2011 Mar 22;108(12):5045-50. Epub 2011 Mar 7. PMID:21383173^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Shin JH, Jung HJ, An YJ, Cho YB, Cha SS, Roe JH. Graded expression of zinc-responsive genes through two regulatory zinc-binding sites in Zur. Proc Natl Acad Sci U S A. 2011 Mar 22;108(12):5045-50. Epub 2011 Mar 7. PMID:21383173 doi:http://dx.doi.org/10.1073/pnas.1017744108

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3mwm"

Categories: Large Structures | Streptomyces coelicolor | An YJ | Cha S-S | Jung HJ

@@ Line 1: / Line 1: @@
 ==Graded expression of zinc-responsive genes through two regulatory zinc-binding sites in Zur==
-<StructureSection load='3mwm' size='340' side='right' caption='[[3mwm]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+<StructureSection load='3mwm' size='340' side='right'caption='[[3mwm]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3mwm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MWM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MWM FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3mwm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MWM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MWM FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">zur gene ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mwm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3mwm RCSB], [http://www.ebi.ac.uk/pdbsum/3mwm PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mwm OCA], [https://pdbe.org/3mwm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mwm RCSB], [https://www.ebi.ac.uk/pdbsum/3mwm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mwm ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9L2H5_STRCO Q9L2H5_STRCO]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 15: / Line 18: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 3mwm" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: An, Y J]]
+[[Category: Large Structures]]
-[[Category: Cha, S S]]
+[[Category: Streptomyces coelicolor]]
-[[Category: Jung, H J]]
+[[Category: An YJ]]
-[[Category: Fur]]
+[[Category: Cha S-S]]
-[[Category: Graded transcription regulation]]
+[[Category: Jung HJ]]
-[[Category: Regulatory metal]]
-[[Category: Transcription]]
-[[Category: Zur]]

3mwm

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Current revision

Graded expression of zinc-responsive genes through two regulatory zinc-binding sites in Zur

Structural highlights

Function

Publication Abstract from PubMed

References

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