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3ood

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Current revision (16:56, 1 November 2023) (edit) (undo)
 
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<StructureSection load='3ood' size='340' side='right'caption='[[3ood]], [[Resolution|resolution]] 1.89&Aring;' scene=''>
<StructureSection load='3ood' size='340' side='right'caption='[[3ood]], [[Resolution|resolution]] 1.89&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3ood]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"achromobacter_radiobacter"_(beijerinck_and_van_delden_1902)_bergey_et_al._1934 "achromobacter radiobacter" (beijerinck and van delden 1902) bergey et al. 1934]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OOD FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3ood]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OOD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OOD FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=EPL:DIETHYL+4-METHOXYPHENYL+PHOSPHATE'>EPL</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.89&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=EPL:DIETHYL+4-METHOXYPHENYL+PHOSPHATE'>EPL</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">opdA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=358 "Achromobacter radiobacter" (Beijerinck and van Delden 1902) Bergey et al. 1934])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Aryldialkylphosphatase Aryldialkylphosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.8.1 3.1.8.1] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ood FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ood OCA], [https://pdbe.org/3ood PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ood RCSB], [https://www.ebi.ac.uk/pdbsum/3ood PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ood ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ood FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ood OCA], [https://pdbe.org/3ood PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ood RCSB], [https://www.ebi.ac.uk/pdbsum/3ood PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ood ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q93LD7_RHIRD Q93LD7_RHIRD]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Aryldialkylphosphatase]]
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[[Category: Agrobacterium tumefaciens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Ely, F]]
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[[Category: Ely F]]
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[[Category: Guddat, L W]]
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[[Category: Guddat LW]]
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[[Category: Ollis, D L]]
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[[Category: Ollis DL]]
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[[Category: Schenk, G]]
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[[Category: Schenk G]]
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[[Category: Binuclear metal ion binding]]
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[[Category: Binuclear metallohydrolase]]
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[[Category: Bioremediation]]
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[[Category: Diethyl 4-methoxyphenyl phosphate]]
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[[Category: Hydrolase]]
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[[Category: Organophosphate hydrolysis]]
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[[Category: Phosphotriesterase]]
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[[Category: Tim barrel]]
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Current revision

Structure of OpdA Y257F mutant soaked with diethyl 4-methoxyphenyl phosphate for 20 hours.

PDB ID 3ood

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