This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3qbe

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:11, 1 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the 3-Dehydroquinate Synthase (aroB) from Mycobacterium tuberculosis==
==Crystal structure of the 3-Dehydroquinate Synthase (aroB) from Mycobacterium tuberculosis==
-
<StructureSection load='3qbe' size='340' side='right' caption='[[3qbe]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
+
<StructureSection load='3qbe' size='340' side='right'caption='[[3qbe]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3qbe]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QBE FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3qbe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QBE FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.07&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3qbd|3qbd]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aroB, MRA_2566 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 Mycobacterium tuberculosis])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qbe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qbe OCA], [https://pdbe.org/3qbe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qbe RCSB], [https://www.ebi.ac.uk/pdbsum/3qbe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qbe ProSAT]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-dehydroquinate_synthase 3-dehydroquinate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.3.4 4.2.3.4] </span></td></tr>
+
</table>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qbe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qbe OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qbe RCSB], [http://www.ebi.ac.uk/pdbsum/3qbe PDBsum]</span></td></tr>
+
== Function ==
-
<table>
+
[https://www.uniprot.org/uniprot/AROB_MYCTU AROB_MYCTU] Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).[HAMAP-Rule:MF_00110]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 3-dehydroquinate synthase]]
+
[[Category: Large Structures]]
-
[[Category: Mycobacterium tuberculosis]]
+
[[Category: Mycobacterium tuberculosis H37Rv]]
-
[[Category: Cheng, W C.]]
+
[[Category: Cheng WC]]
-
[[Category: Wang, W C.]]
+
[[Category: Wang WC]]
-
[[Category: Wen, Y H.]]
+
[[Category: Wen YH]]
-
[[Category: Lyase]]
+
-
[[Category: Mycobacterium tuberculosis]]
+
-
[[Category: Rossmann-fold]]
+
-
[[Category: Shikimate pathway]]
+

Current revision

Crystal structure of the 3-Dehydroquinate Synthase (aroB) from Mycobacterium tuberculosis

PDB ID 3qbe

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools