This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3qfn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:12, 1 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of Streptococcal asymmetric Ap4A hydrolase and phosphodiesterase Spr1479/SapH in complex with inorganic phosphate==
==Crystal structure of Streptococcal asymmetric Ap4A hydrolase and phosphodiesterase Spr1479/SapH in complex with inorganic phosphate==
-
<StructureSection load='3qfn' size='340' side='right' caption='[[3qfn]], [[Resolution|resolution]] 2.31&Aring;' scene=''>
+
<StructureSection load='3qfn' size='340' side='right'caption='[[3qfn]], [[Resolution|resolution]] 2.31&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3qfn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QFN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QFN FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3qfn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_R6 Streptococcus pneumoniae R6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QFN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QFN FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.31&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3qfm|3qfm]], [[3qfo|3qfo]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">spr1479 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 Streptococcus pneumoniae])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qfn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qfn OCA], [https://pdbe.org/3qfn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qfn RCSB], [https://www.ebi.ac.uk/pdbsum/3qfn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qfn ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qfn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qfn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qfn RCSB], [http://www.ebi.ac.uk/pdbsum/3qfn PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8DNX4_STRR6 Q8DNX4_STRR6]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Streptococcus pneumoniae]]
+
[[Category: Large Structures]]
-
[[Category: Chen, Y]]
+
[[Category: Streptococcus pneumoniae R6]]
-
[[Category: Cheng, W]]
+
[[Category: Chen Y]]
-
[[Category: Jiang, Y L]]
+
[[Category: Cheng W]]
-
[[Category: Yu, W L]]
+
[[Category: Jiang YL]]
-
[[Category: Zhang, C C]]
+
[[Category: Yu WL]]
-
[[Category: Zhang, J W]]
+
[[Category: Zhang CC]]
-
[[Category: Zhou, C Z]]
+
[[Category: Zhang JW]]
-
[[Category: Fe3+]]
+
[[Category: Zhou CZ]]
-
[[Category: Hydrolase]]
+
-
[[Category: Mn2+]]
+
-
[[Category: Po4]]
+
-
[[Category: Sandwich fold]]
+

Current revision

Crystal structure of Streptococcal asymmetric Ap4A hydrolase and phosphodiesterase Spr1479/SapH in complex with inorganic phosphate

PDB ID 3qfn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools