This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3qjo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3qjo" [edit=sysop:move=sysop])
Current revision (17:13, 1 November 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 3qjo is ON HOLD
+
==Refined Structure of the functional unit (KLH1-H) of keyhole limpet hemocyanin==
 +
<StructureSection load='3qjo' size='340' side='right'caption='[[3qjo]], [[Resolution|resolution]] 4.00&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3qjo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Megathura_crenulata Megathura crenulata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QJO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QJO FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 4&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qjo OCA], [https://pdbe.org/3qjo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qjo RCSB], [https://www.ebi.ac.uk/pdbsum/3qjo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qjo ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/HCY1_MEGCR HCY1_MEGCR] Hemocyanins are copper-containing oxygen carriers occurring freely dissolved in the hemolymph of many mollusks and arthropods.<ref>PMID:8829804</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Hemocyanins are multimeric oxygen-transport proteins in the hemolymph of many arthropods and mollusks. The overall molecular architecture of arthropod and molluscan hemocyanin is very different, although they possess a similar binuclear type 3 copper center to bind oxygen in a side-on conformation. Gastropod hemocyanin is a 35 nm cylindrical didecamer (2 x 10-mer) based on a 400 kDa subunit. The latter is subdivided into eight paralogous "functional units" (FU-a to FU-h), each with an active site. FU-a to FU-f contribute to the cylinder wall, whereas FU-g and FU-h form the internal collar complex. Atomic structures of FU-e and FU-g, and a 9 A cryoEM structure of the 8 MDa didecamer are available. Recently, the structure of keyhole limpet hemocyanin FU-h (KLH1-h) was presented as a C(alpha) -trace at 4 A resolution. Unlike the other seven FU types, FU-h contains an additional C-terminal domain with a cupredoxin-like fold. Because of the resolution limit of 4 A, in some loops, the course of the protein backbone could not be established with high certainty yet. Here, we present a refined atomic structure of FU-h (KLH1-h) obtained from low-resolution refinement, which unambiguously establishes the course of the polypeptide backbone and reveals the disulfide bridges as well as the orientation of bulky amino acids.
-
Authors: Jaenicke, E., Buchler, K., Decker, H. , Markl, J., Schroder, G.F.
+
The refined structure of functional unit h of keyhole limpet hemocyanin (KLH1-h) reveals disulfide bridges.,Jaenicke E, Buchler K, Decker H, Markl J, Schroder GF IUBMB Life. 2011 Mar;63(3):183-7. doi: 10.1002/iub.435. PMID:21445849<ref>PMID:21445849</ref>
-
Description: Refined Structure of the functional unit (KLH1-H) of keyhole limpet hemocyanin
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 3qjo" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Megathura crenulata]]
 +
[[Category: Buchler K]]
 +
[[Category: Decker H]]
 +
[[Category: Jaenicke E]]
 +
[[Category: Markl J]]
 +
[[Category: Schroder GF]]

Current revision

Refined Structure of the functional unit (KLH1-H) of keyhole limpet hemocyanin

PDB ID 3qjo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools