This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3qq1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:14, 1 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of a double mutant [A58P, DEL(N59)] of 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8PS) from Neisseria meningitidis==
==Crystal structure of a double mutant [A58P, DEL(N59)] of 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8PS) from Neisseria meningitidis==
-
<StructureSection load='3qq1' size='340' side='right' caption='[[3qq1]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
+
<StructureSection load='3qq1' size='340' side='right'caption='[[3qq1]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3qq1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Neimb Neimb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QQ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QQ1 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3qq1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_meningitidis_MC58 Neisseria meningitidis MC58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QQ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QQ1 FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3qpy|3qpy]], [[3qpz|3qpz]], [[3qq0|3qq0]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">kdsA, NMB1283 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122586 NEIMB])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qq1 OCA], [https://pdbe.org/3qq1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qq1 RCSB], [https://www.ebi.ac.uk/pdbsum/3qq1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qq1 ProSAT]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-deoxy-8-phosphooctulonate_synthase 3-deoxy-8-phosphooctulonate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.55 2.5.1.55] </span></td></tr>
+
</table>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qq1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qq1 RCSB], [http://www.ebi.ac.uk/pdbsum/3qq1 PDBsum]</span></td></tr>
+
== Function ==
-
<table>
+
[https://www.uniprot.org/uniprot/KDSA_NEIMB KDSA_NEIMB]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 14: Line 15:
Targeting the role of a key conserved motif for substrate selection and catalysis by 3-deoxy-D-&lt;i&gt;manno&lt;/i&gt;-octulosonate 8-phosphate synthase.,Allison TM, Hutton RD, Cochrane FC, Yeoman JA, Jameson GB, Parker EJ Biochemistry. 2011 Mar 25. PMID:21438567<ref>PMID:21438567</ref>
Targeting the role of a key conserved motif for substrate selection and catalysis by 3-deoxy-D-&lt;i&gt;manno&lt;/i&gt;-octulosonate 8-phosphate synthase.,Allison TM, Hutton RD, Cochrane FC, Yeoman JA, Jameson GB, Parker EJ Biochemistry. 2011 Mar 25. PMID:21438567<ref>PMID:21438567</ref>
-
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3qq1" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Kdo-8-phosphate synthase|Kdo-8-phosphate synthase]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 3-deoxy-8-phosphooctulonate synthase]]
+
[[Category: Large Structures]]
-
[[Category: Neimb]]
+
[[Category: Neisseria meningitidis MC58]]
-
[[Category: Allison, T M.]]
+
[[Category: Allison TM]]
-
[[Category: Jameson, G B.]]
+
[[Category: Jameson GB]]
-
[[Category: Parker, E J.]]
+
[[Category: Parker EJ]]
-
[[Category: Biosynthesis]]
+
-
[[Category: Kdo8 kdop]]
+
-
[[Category: Kdo8p]]
+
-
[[Category: Kdop]]
+
-
[[Category: Lipopolysaccharide]]
+
-
[[Category: Lipopolysaccharide biosynthesis]]
+
-
[[Category: Lyase]]
+
-
[[Category: Manno-octulosonate]]
+
-
[[Category: Synthase]]
+
-
[[Category: Tim barrel]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of a double mutant [A58P, DEL(N59)] of 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8PS) from Neisseria meningitidis

PDB ID 3qq1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3qq1"
Personal tools