3rt4
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3rt4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Camelus_dromedarius Camelus dromedarius]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3mu9 3mu9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RT4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RT4 FirstGlance]. <br> | <table><tr><td colspan='2'>[[3rt4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Camelus_dromedarius Camelus dromedarius]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3mu9 3mu9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RT4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RT4 FirstGlance]. <br> | ||
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LP5:(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL)+3-HYDROXYTETRADECANOATE'>LP5</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LP5:(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL)+3-HYDROXYTETRADECANOATE'>LP5</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rt4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rt4 OCA], [https://pdbe.org/3rt4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rt4 RCSB], [https://www.ebi.ac.uk/pdbsum/3rt4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rt4 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rt4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rt4 OCA], [https://pdbe.org/3rt4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rt4 RCSB], [https://www.ebi.ac.uk/pdbsum/3rt4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rt4 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | + | [https://www.uniprot.org/uniprot/PGRP1_CAMDR PGRP1_CAMDR] Pattern receptor that binds to murein peptidoglycans (PGN) of Gram-positive bacteria. Has bactericidal activity towards Gram-positive bacteria. May kill Gram-positive bacteria by interfering with peptidoglycan biosynthesis. Binds also to Gram-negative bacteria. Involved in innate immunity. Is microbicidal for Gram-positive and Gram-negative bacteria and yeast. May function in intracellular killing of bacteria (By similarity). | |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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[[Category: Camelus dromedarius]] | [[Category: Camelus dromedarius]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Dey | + | [[Category: Dey S]] |
- | [[Category: Dube | + | [[Category: Dube D]] |
- | [[Category: Kaur | + | [[Category: Kaur P]] |
- | [[Category: Mishra | + | [[Category: Mishra B]] |
- | [[Category: Mitra | + | [[Category: Mitra DK]] |
- | [[Category: Sharma | + | [[Category: Sharma P]] |
- | [[Category: Sharma | + | [[Category: Sharma S]] |
- | [[Category: Singh | + | [[Category: Singh A]] |
- | [[Category: Singh | + | [[Category: Singh N]] |
- | [[Category: Singh | + | [[Category: Singh TP]] |
- | [[Category: Sinha | + | [[Category: Sinha M]] |
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Current revision
Structural Basis of Recognition of Pathogen-associated Molecular Patterns and Inhibition of Proinflammatory Cytokines by Camel Peptidoglycan Recognition Protein
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Categories: Camelus dromedarius | Large Structures | Dey S | Dube D | Kaur P | Mishra B | Mitra DK | Sharma P | Sharma S | Singh A | Singh N | Singh TP | Sinha M