This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5m1i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:19, 1 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Structure of GH36 alpha-galactosidase from Thermotoga maritima in a covalent complex with a cyclopropyl carbasugar.==
==Structure of GH36 alpha-galactosidase from Thermotoga maritima in a covalent complex with a cyclopropyl carbasugar.==
-
<StructureSection load='5m1i' size='340' side='right' caption='[[5m1i]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
+
<StructureSection load='5m1i' size='340' side='right'caption='[[5m1i]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5m1i]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M1I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M1I FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5m1i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M1I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5M1I FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=7D8:(1~{R},2~{S},3~{S},4~{S},6~{R})-4-FLUORANYL-1-(HYDROXYMETHYL)BICYCLO[4.1.0]HEPTANE-2,3-DIOL'>7D8</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-galactosidase Alpha-galactosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.22 3.2.1.22] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=7D8:(1~{R},2~{S},3~{S},4~{S},6~{R})-4-FLUORANYL-1-(HYDROXYMETHYL)BICYCLO[4.1.0]HEPTANE-2,3-DIOL'>7D8</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m1i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m1i OCA], [http://pdbe.org/5m1i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m1i RCSB], [http://www.ebi.ac.uk/pdbsum/5m1i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m1i ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5m1i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m1i OCA], [https://pdbe.org/5m1i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5m1i RCSB], [https://www.ebi.ac.uk/pdbsum/5m1i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5m1i ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AGAL_THEMA AGAL_THEMA] Hydrolyzes the short-chain alpha-galactosaccharides raffinose, melibiose and stachyose.<ref>PMID:25486100</ref> <ref>PMID:9741105</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 19:
</div>
</div>
<div class="pdbe-citations 5m1i" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5m1i" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Galactosidase 3D structures|Galactosidase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Alpha-galactosidase]]
+
[[Category: Large Structures]]
-
[[Category: Gloster, T]]
+
[[Category: Thermotoga maritima]]
-
[[Category: Pengelly, R]]
+
[[Category: Gloster T]]
-
[[Category: Glycoside hydrolase]]
+
[[Category: Pengelly R]]
-
[[Category: Hydrolase]]
+

Current revision

Structure of GH36 alpha-galactosidase from Thermotoga maritima in a covalent complex with a cyclopropyl carbasugar.

PDB ID 5m1i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5m1i"
Personal tools