This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5m1l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:20, 1 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Structure of DNA AGCGA-quadruplex adopted by 15-mer d(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in regulatory region of the PLEKHG3 human gene==
==Structure of DNA AGCGA-quadruplex adopted by 15-mer d(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in regulatory region of the PLEKHG3 human gene==
-
<StructureSection load='5m1l' size='340' side='right' caption='[[5m1l]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
+
<StructureSection load='5m1l' size='340' side='right'caption='[[5m1l]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5m1l]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M1L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M1L FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5m1l]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M1L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5M1L FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m1l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m1l OCA], [http://pdbe.org/5m1l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m1l RCSB], [http://www.ebi.ac.uk/pdbsum/5m1l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m1l ProSAT]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5m1l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m1l OCA], [https://pdbe.org/5m1l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5m1l RCSB], [https://www.ebi.ac.uk/pdbsum/5m1l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5m1l ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 19: Line 20:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Kocman, V]]
+
[[Category: Homo sapiens]]
-
[[Category: Plavec, J]]
+
[[Category: Large Structures]]
-
[[Category: Agcga-quadruplex]]
+
[[Category: Kocman V]]
-
[[Category: Agcga-quadruplex family]]
+
[[Category: Plavec J]]
-
[[Category: Dna]]
+
-
[[Category: G-g n1-carbonyl symmetric base pair]]
+
-
[[Category: Gaga-quartet]]
+
-
[[Category: Plekhg3 gene]]
+

Current revision

Structure of DNA AGCGA-quadruplex adopted by 15-mer d(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in regulatory region of the PLEKHG3 human gene

PDB ID 5m1l

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5m1l"
Personal tools