This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5m2o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:22, 1 November 2023) (edit) (undo)
 
Line 1: Line 1:
==R. flavefaciens' third ScaB cohesin in complex with a group 1 dockerin==
==R. flavefaciens' third ScaB cohesin in complex with a group 1 dockerin==
-
<StructureSection load='5m2o' size='340' side='right' caption='[[5m2o]], [[Resolution|resolution]] 1.26&Aring;' scene=''>
+
<StructureSection load='5m2o' size='340' side='right'caption='[[5m2o]], [[Resolution|resolution]] 1.26&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5m2o]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruminococcus_flavefaciens_fd-1 Ruminococcus flavefaciens fd-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M2O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M2O FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5m2o]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruminococcus_flavefaciens_FD-1 Ruminococcus flavefaciens FD-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M2O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5M2O FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.26&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5aoz|5aoz]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">scaB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=641112 Ruminococcus flavefaciens FD-1])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5m2o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m2o OCA], [https://pdbe.org/5m2o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5m2o RCSB], [https://www.ebi.ac.uk/pdbsum/5m2o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5m2o ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m2o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m2o OCA], [http://pdbe.org/5m2o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m2o RCSB], [http://www.ebi.ac.uk/pdbsum/5m2o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m2o ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0AEF4_RUMFL A0AEF4_RUMFL]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ruminococcus flavefaciens fd-1]]
+
[[Category: Large Structures]]
-
[[Category: Bule, P]]
+
[[Category: Ruminococcus flavefaciens FD-1]]
-
[[Category: Carvalho, A L]]
+
[[Category: Bule P]]
-
[[Category: Fontes, C M.G A]]
+
[[Category: Carvalho AL]]
-
[[Category: Najmudin, S]]
+
[[Category: Fontes CMGA]]
-
[[Category: Cellulosome]]
+
[[Category: Najmudin S]]
-
[[Category: Cohesin]]
+
-
[[Category: Complex]]
+
-
[[Category: Dockerin]]
+
-
[[Category: Protein binding]]
+
-
[[Category: R. flavefacien]]
+
-
[[Category: Structural protein]]
+

Current revision

R. flavefaciens' third ScaB cohesin in complex with a group 1 dockerin

PDB ID 5m2o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools