3w9r
From Proteopedia
(Difference between revisions)
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==Crystal structure of the high-affinity abscisic acid receptor PYL9/RCAR9 bound to ABA== | ==Crystal structure of the high-affinity abscisic acid receptor PYL9/RCAR9 bound to ABA== | ||
| - | <StructureSection load='3w9r' size='340' side='right'caption='[[3w9r]]' scene=''> | + | <StructureSection load='3w9r' size='340' side='right'caption='[[3w9r]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W9R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W9R FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3w9r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W9R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W9R FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w9r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w9r OCA], [https://pdbe.org/3w9r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w9r RCSB], [https://www.ebi.ac.uk/pdbsum/3w9r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w9r ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A8S:(2Z,4E)-5-[(1S)-1-HYDROXY-2,6,6-TRIMETHYL-4-OXOCYCLOHEX-2-EN-1-YL]-3-METHYLPENTA-2,4-DIENOIC+ACID'>A8S</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w9r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w9r OCA], [https://pdbe.org/3w9r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w9r RCSB], [https://www.ebi.ac.uk/pdbsum/3w9r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w9r ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/PYL9_ARATH PYL9_ARATH] Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. Confers enhanced sensitivity to ABA.<ref>PMID:19407143</ref> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Arabidopsis receptors of abscisic acid (ABA), the key plant hormone for adaptation to water stress, comprise 14 PYR/PYLs/RCARs proteins classified into three subfamilies I, II, and III, which suggests functional differentiation. Although their monomer-dimer equilibria may be correlated with differences in their ABA-binding affinities, how the dimerization decreases the affinity is unclear. Comparative structural and binding studies between PYL9, which is a representative of high-affinity subfamily I, and low-affinity members of subfamily III reveals that the nonpolar triplet (Ile110, Val162, and Leu165) and Pro64 contribute to enhance ABA-binding affinity by inducing a shift of the ABA carboxyl group to form additional direct hydrogen bonds with conserved Asn169. Our mutation studies of PYL1 successfully produced a monomeric mutant PYL1 exhibiting low ABA affinity and also a dimeric mutant PYL1 exhibiting high ABA-binding affinity, suggesting that dimer formation of ABA receptors is not essential for their low ABA-binding affinity. Our study contributes toward establishing the structural basis for the higher ABA-binding affinity of the subfamily receptors and provides a clue for understanding the broad spectrum of hormone actions in plants manifested by the different hormone-binding affinity of multiple receptors. | ||
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| + | Mechanism of high-affinity abscisic acid binding to PYL9/RCAR1.,Nakagawa M, Kagiyama M, Shibata N, Hirano Y, Hakoshima T Genes Cells. 2014 Mar 19. doi: 10.1111/gtc.12140. PMID:24645846<ref>PMID:24645846</ref> | ||
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| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 3w9r" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Abscisic acid receptor 3D structures|Abscisic acid receptor 3D structures]] | *[[Abscisic acid receptor 3D structures|Abscisic acid receptor 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Arabidopsis thaliana]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Hakoshima T]] | [[Category: Hakoshima T]] | ||
Current revision
Crystal structure of the high-affinity abscisic acid receptor PYL9/RCAR9 bound to ABA
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