This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3wc4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:02, 8 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3wc4| PDB=3wc4 | SCENE= }}
 
-
===Crystal structure of UDP-glucose: anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea===
 
-
{{ABSTRACT_PUBMED_24121335}}
 
-
==About this Structure==
+
==Crystal structure of UDP-glucose: anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea==
-
[[3wc4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clitoria_ternatea Clitoria ternatea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WC4 OCA].
+
<StructureSection load='3wc4' size='340' side='right'caption='[[3wc4]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3wc4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clitoria_ternatea Clitoria ternatea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WC4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WC4 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wc4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wc4 OCA], [https://pdbe.org/3wc4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wc4 RCSB], [https://www.ebi.ac.uk/pdbsum/3wc4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wc4 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A4F1R4_CLITE A4F1R4_CLITE]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Flowers of the butterfly pea (Clitoria ternatea) accumulate a group of polyacylated anthocyanins, named ternatins, in their petals. The first step in ternatin biosynthesis is the transfer of glucose from UDP-glucose to anthocyanidins such as delphinidin, a reaction catalyzed in C. ternatea by UDP-glucose:anthocyanidin 3-O-glucosyltransferase (Ct3GT-A; AB185904). To elucidate the structure-function relationship of Ct3GT-A, recombinant Ct3GT-A was expressed in Escherichia coli and its tertiary structure was determined to 1.85 A resolution by using X-ray crystallography. The structure of Ct3GT-A shows a common folding topology, the GT-B fold, comprised of two Rossmann-like beta/alpha/beta domains and a cleft located between the N- and C-domains containing two cavities that are used as binding sites for the donor (UDP-Glc) and acceptor substrates. By comparing the structure of Ct3GT-A with that of the flavonoid glycosyltransferase VvGT1 from red grape (Vitis vinifera) in complex with UDP-2-deoxy-2-fluoro glucose and kaempferol, locations of the catalytic His-Asp dyad and the residues involved in recognizing UDP-2-deoxy-2-fluoro glucose were essentially identical in Ct3GT-A, but certain residues of VvGT1 involved in binding kaempferol were found to be substituted in Ct3GT-A. These findings are important for understanding the differentiation of acceptor-substrate recognition in these two enzymes.
-
==Reference==
+
Crystal structure of UDP-glucose:anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea.,Hiromoto T, Honjo E, Tamada T, Noda N, Kazuma K, Suzuki M, Kuroki R J Synchrotron Radiat. 2013 Nov;20(Pt 6):894-8. doi: 10.1107/S0909049513020712., Epub 2013 Sep 29. PMID:24121335<ref>PMID:24121335</ref>
-
<ref group="xtra">PMID:024121335</ref><references group="xtra"/><references/>
+
 
-
[[Category: Anthocyanidin 3-O-glucosyltransferase]]
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 3wc4" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Clitoria ternatea]]
[[Category: Clitoria ternatea]]
-
[[Category: Hiromoto, T.]]
+
[[Category: Large Structures]]
-
[[Category: Honjo, E.]]
+
[[Category: Hiromoto T]]
-
[[Category: Kuroki, R.]]
+
[[Category: Honjo E]]
-
[[Category: Tamada, T.]]
+
[[Category: Kuroki R]]
-
[[Category: Glucosylation]]
+
[[Category: Tamada T]]
-
[[Category: Glucosyltransferase]]
+
-
[[Category: Gt-b fold]]
+
-
[[Category: Transferase]]
+
-
[[Category: Udp-glucose/anthocyanidin binding]]
+

Current revision

Crystal structure of UDP-glucose: anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea

PDB ID 3wc4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools