This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3wfj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:08, 8 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==The complex structure of D-mandelate dehydrogenase with NADH==
==The complex structure of D-mandelate dehydrogenase with NADH==
-
<StructureSection load='3wfj' size='340' side='right' caption='[[3wfj]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+
<StructureSection load='3wfj' size='340' side='right'caption='[[3wfj]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3wfj]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WFJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3wfj]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_faecium Enterococcus faecium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WFJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WFJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3wfi|3wfi]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-dehydropantoate_2-reductase 2-dehydropantoate 2-reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.169 1.1.1.169] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wfj OCA], [https://pdbe.org/3wfj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wfj RCSB], [https://www.ebi.ac.uk/pdbsum/3wfj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wfj ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wfj OCA], [http://pdbe.org/3wfj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3wfj RCSB], [http://www.ebi.ac.uk/pdbsum/3wfj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3wfj ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/E3USM3_ENTFC E3USM3_ENTFC]] Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (By similarity).[RuleBase:RU003776]
+
[https://www.uniprot.org/uniprot/E3USM3_ENTFC E3USM3_ENTFC] Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (By similarity).[RuleBase:RU003776]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 19:
</div>
</div>
<div class="pdbe-citations 3wfj" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3wfj" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Mandelate dehydrogenase|Mandelate dehydrogenase]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 2-dehydropantoate 2-reductase]]
+
[[Category: Enterococcus faecium]]
-
[[Category: Arai, K]]
+
[[Category: Large Structures]]
-
[[Category: Fujisawa, S]]
+
[[Category: Arai K]]
-
[[Category: Furukawa, N]]
+
[[Category: Fujisawa S]]
-
[[Category: Miyanaga, A]]
+
[[Category: Furukawa N]]
-
[[Category: Nakajima, M]]
+
[[Category: Miyanaga A]]
-
[[Category: Taguchi, H]]
+
[[Category: Nakajima M]]
-
[[Category: Dehydrogenase]]
+
[[Category: Taguchi H]]
-
[[Category: Nadh binding]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Rosmann fold]]
+

Current revision

The complex structure of D-mandelate dehydrogenase with NADH

PDB ID 3wfj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools