This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3wh3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:10, 8 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==human Mincle, ligand free form==
==human Mincle, ligand free form==
-
<StructureSection load='3wh3' size='340' side='right' caption='[[3wh3]], [[Resolution|resolution]] 1.32&Aring;' scene=''>
+
<StructureSection load='3wh3' size='340' side='right'caption='[[3wh3]], [[Resolution|resolution]] 1.32&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3wh3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WH3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WH3 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3wh3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WH3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WH3 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.32&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3wh2|3wh2]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CLEC4E ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wh3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wh3 OCA], [https://pdbe.org/3wh3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wh3 RCSB], [https://www.ebi.ac.uk/pdbsum/3wh3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wh3 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wh3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wh3 OCA], [http://pdbe.org/3wh3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3wh3 RCSB], [http://www.ebi.ac.uk/pdbsum/3wh3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3wh3 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/CLC4E_HUMAN CLC4E_HUMAN]] C-type lectin that functions as cell-surface receptor for a wide variety of ligands such as damaged cells, fungi and mycobacteria. Plays a role in the recognition of pathogenic fungi, such as Candida albicans. The detection of mycobacteria is via trehalose 6,6'-dimycolate (TDM), a cell wall glycolipid. Specifically recognizes alpha-mannose residues on pathogenic fungi of the genus Malassezia. Recognizes also SAP130, a nuclear protein, that is released by dead or dying cells. Transduces signals through an ITAM-containing adapter protein, Fc receptor gamma chain /FCER1G. Induces secretion of inflammatory cytokines through a pathway that depends on SYK, CARD9 and NF-kappa-B.
+
[https://www.uniprot.org/uniprot/CLC4E_HUMAN CLC4E_HUMAN] C-type lectin that functions as cell-surface receptor for a wide variety of ligands such as damaged cells, fungi and mycobacteria. Plays a role in the recognition of pathogenic fungi, such as Candida albicans. The detection of mycobacteria is via trehalose 6,6'-dimycolate (TDM), a cell wall glycolipid. Specifically recognizes alpha-mannose residues on pathogenic fungi of the genus Malassezia. Recognizes also SAP130, a nuclear protein, that is released by dead or dying cells. Transduces signals through an ITAM-containing adapter protein, Fc receptor gamma chain /FCER1G. Induces secretion of inflammatory cytokines through a pathway that depends on SYK, CARD9 and NF-kappa-B.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
-
[[Category: Furukawa, A]]
+
[[Category: Large Structures]]
-
[[Category: Kamishikiryo, J]]
+
[[Category: Furukawa A]]
-
[[Category: Kanda, R]]
+
[[Category: Kamishikiryo J]]
-
[[Category: Maenaka, K]]
+
[[Category: Kanda R]]
-
[[Category: Miyake, Y]]
+
[[Category: Maenaka K]]
-
[[Category: Mori, D]]
+
[[Category: Miyake Y]]
-
[[Category: Okabe, Y]]
+
[[Category: Mori D]]
-
[[Category: Ose, T]]
+
[[Category: Okabe Y]]
-
[[Category: Toji, A]]
+
[[Category: Ose T]]
-
[[Category: Toyonaga, K]]
+
[[Category: Toji A]]
-
[[Category: Yamasaki, S]]
+
[[Category: Toyonaga K]]
-
[[Category: C-type lectin]]
+
[[Category: Yamasaki S]]
-
[[Category: Carbohydrate recognition]]
+
-
[[Category: Glycolipid binding]]
+
-
[[Category: Immune system]]
+
-
[[Category: Plasmamembrane]]
+

Current revision

human Mincle, ligand free form

PDB ID 3wh3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools