This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3wn6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:16, 8 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3wn6' size='340' side='right'caption='[[3wn6]], [[Resolution|resolution]] 2.16&Aring;' scene=''>
<StructureSection load='3wn6' size='340' side='right'caption='[[3wn6]], [[Resolution|resolution]] 2.16&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3wn6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Japanese_rice Japanese rice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WN6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WN6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3wn6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WN6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WN6 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TAR:D(-)-TARTARIC+ACID'>TAR</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.16&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AMY1.1, AMY1A ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39947 Japanese rice])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TAR:D(-)-TARTARIC+ACID'>TAR</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Alpha-amylase Alpha-amylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.1 3.2.1.1] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wn6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wn6 OCA], [https://pdbe.org/3wn6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wn6 RCSB], [https://www.ebi.ac.uk/pdbsum/3wn6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wn6 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wn6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wn6 OCA], [https://pdbe.org/3wn6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wn6 RCSB], [https://www.ebi.ac.uk/pdbsum/3wn6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wn6 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/AMY1_ORYSJ AMY1_ORYSJ]] Important for breakdown of endosperm starch during germination.
+
[https://www.uniprot.org/uniprot/AMY1_ORYSJ AMY1_ORYSJ] Important for breakdown of endosperm starch during germination.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 27: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Alpha-amylase]]
 
-
[[Category: Japanese rice]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Harada, K]]
+
[[Category: Oryza sativa Japonica Group]]
-
[[Category: Ishiyama, Y]]
+
[[Category: Harada K]]
-
[[Category: Ito, K]]
+
[[Category: Ishiyama Y]]
-
[[Category: Mitsui, T]]
+
[[Category: Ito K]]
-
[[Category: Ochiai, A]]
+
[[Category: Mitsui T]]
-
[[Category: Sugai, H]]
+
[[Category: Ochiai A]]
-
[[Category: Tanaka, S]]
+
[[Category: Sugai H]]
-
[[Category: Tanaka, T]]
+
[[Category: Tanaka S]]
-
[[Category: Taniguchi, M]]
+
[[Category: Tanaka T]]
-
[[Category: Uchiumi, T]]
+
[[Category: Taniguchi M]]
-
[[Category: Carbohydrate/sugar binding]]
+
[[Category: Uchiumi T]]
-
[[Category: Glycosylation]]
+
-
[[Category: Hydrolase]]
+

Current revision

Crystal structure of alpha-amylase AmyI-1 from Oryza sativa

PDB ID 3wn6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3wn6"
Personal tools