3wyi
From Proteopedia
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==Structure of S. aureus undecaprenyl diphosphate synthase== | ==Structure of S. aureus undecaprenyl diphosphate synthase== | ||
| - | <StructureSection load='3wyi' size='340' side='right'caption='[[3wyi]]' scene=''> | + | <StructureSection load='3wyi' size='340' side='right'caption='[[3wyi]], [[Resolution|resolution]] 2.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WYI FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3wyi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WYI FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wyi OCA], [https://pdbe.org/3wyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wyi RCSB], [https://www.ebi.ac.uk/pdbsum/3wyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wyi ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wyi OCA], [https://pdbe.org/3wyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wyi RCSB], [https://www.ebi.ac.uk/pdbsum/3wyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wyi ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | We report the results of an investigation of the activity of a series of amidine and bisamidine compounds against Staphylococcus aureus and Escherichia coli. The most active compounds bound to an AT-rich DNA dodecamer (CGCGAATTCGCG)2 and using DSC were found to increase the melting transition by up to 24 degrees C. Several compounds also inhibited undecaprenyl diphosphate synthase (UPPS) with IC50 values of 100-500 nM, and we found good correlations (R2 = 0.89, S. aureus; R2 = 0.79, E. coli) between experimental and predicted cell growth inhibition by using DNA DeltaTm and UPPS IC50 experimental results together with one computed descriptor. We also solved the structures of three bisamidines binding to DNA as well as three UPPS structures. Overall, the results are of general interest in the context of the development of resistance-resistant antibiotics that involve multitargeting. | ||
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| + | Antibacterial Drug Leads: DNA and Enzyme Multitargeting.,Zhu W, Wang Y, Li K, Gao J, Huang CH, Chen CC, Ko TP, Zhang Y, Guo RT, Oldfield E J Med Chem. 2015 Jan 22. PMID:25574764<ref>PMID:25574764</ref> | ||
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| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 3wyi" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Undecaprenyl pyrophosphate synthase|Undecaprenyl pyrophosphate synthase]] | *[[Undecaprenyl pyrophosphate synthase|Undecaprenyl pyrophosphate synthase]] | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| + | [[Category: Staphylococcus aureus]] | ||
[[Category: Gao J]] | [[Category: Gao J]] | ||
[[Category: Guo RT]] | [[Category: Guo RT]] | ||
Current revision
Structure of S. aureus undecaprenyl diphosphate synthase
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