This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4f20

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:50, 8 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structures reveal the multi-ligand binding mechanism of the Staphylococcus aureus ClfB==
==Crystal structures reveal the multi-ligand binding mechanism of the Staphylococcus aureus ClfB==
-
<StructureSection load='4f20' size='340' side='right' caption='[[4f20]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='4f20' size='340' side='right'caption='[[4f20]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4f20]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F20 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4F20 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4f20]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_MRSA252 Staphylococcus aureus subsp. aureus MRSA252]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F20 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4F20 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.502&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4f1z|4f1z]], [[4f24|4f24]], [[4f27|4f27]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">clfB, SAR2709 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 Staphylococcus aureus])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4f20 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f20 OCA], [https://pdbe.org/4f20 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4f20 RCSB], [https://www.ebi.ac.uk/pdbsum/4f20 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4f20 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4f20 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f20 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4f20 RCSB], [http://www.ebi.ac.uk/pdbsum/4f20 PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/DMKN_HUMAN DMKN_HUMAN]] May act as a soluble regulator of keratinocyte differentiation (Potential).
+
[https://www.uniprot.org/uniprot/CLFB_STAAR CLFB_STAAR] Cell surface-associated protein implicated in virulence by promoting bacterial attachment to both alpha- and beta-chains of human fibrinogen and inducing the formation of bacterial clumps.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4f20" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
Line 25: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Staphylococcus aureus]]
+
[[Category: Homo sapiens]]
-
[[Category: Chen, Y G]]
+
[[Category: Large Structures]]
-
[[Category: Deng, X M]]
+
[[Category: Staphylococcus aureus subsp. aureus MRSA252]]
-
[[Category: Feng, Y]]
+
[[Category: Chen YG]]
-
[[Category: Liu, B]]
+
[[Category: Deng XM]]
-
[[Category: Liu, L]]
+
[[Category: Feng Y]]
-
[[Category: Wang, J W]]
+
[[Category: Liu B]]
-
[[Category: Xiang, H]]
+
[[Category: Liu L]]
-
[[Category: Yang, M J]]
+
[[Category: Wang JW]]
-
[[Category: Cell adhesion]]
+
[[Category: Xiang H]]
-
[[Category: Cell adhesion-cytokine complex]]
+
[[Category: Yang MJ]]
-
[[Category: Cell surface]]
+
-
[[Category: Dermokine]]
+
-
[[Category: Dev-igg fold]]
+
-
[[Category: Protein-peptide complex]]
+

Current revision

Crystal structures reveal the multi-ligand binding mechanism of the Staphylococcus aureus ClfB

PDB ID 4f20

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools