This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4i60

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:12, 8 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of avidin - biotinylruthenocene complex==
==Crystal structure of avidin - biotinylruthenocene complex==
-
<StructureSection load='4i60' size='340' side='right' caption='[[4i60]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='4i60' size='340' side='right'caption='[[4i60]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4i60]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chick Chick]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I60 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4I60 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4i60]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I60 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4I60 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=B1R:[(1,2,3,4,5-ETA)-CYCLOPENTADIENYL][(1,2,3,4,5-ETA)-{5-[(3AS,4S,6AR)-2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL]PENTANOYL}CYCLOPENTADIENYL]RUTHENIUM'>B1R</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1avd|1avd]], [[2avi|2avi]], [[1ave|1ave]], [[1vyo|1vyo]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B1R:[(1,2,3,4,5-ETA)-CYCLOPENTADIENYL][(1,2,3,4,5-ETA)-{5-[(3AS,4S,6AR)-2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL]PENTANOYL}CYCLOPENTADIENYL]RUTHENIUM'>B1R</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4i60 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i60 OCA], [http://pdbe.org/4i60 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4i60 RCSB], [http://www.ebi.ac.uk/pdbsum/4i60 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4i60 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4i60 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i60 OCA], [https://pdbe.org/4i60 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4i60 RCSB], [https://www.ebi.ac.uk/pdbsum/4i60 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4i60 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/AVID_CHICK AVID_CHICK]] The biological function of avidin is not known. Forms a strong non-covalent specific complex with biotin (one molecule of biotin per subunit of avidin).
+
[https://www.uniprot.org/uniprot/AVID_CHICK AVID_CHICK] The biological function of avidin is not known. Forms a strong non-covalent specific complex with biotin (one molecule of biotin per subunit of avidin).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 21:
==See Also==
==See Also==
-
*[[Avidin|Avidin]]
+
*[[Avidin 3D structures|Avidin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Chick]]
+
[[Category: Gallus gallus]]
-
[[Category: Bujacz, A]]
+
[[Category: Large Structures]]
-
[[Category: Bujacz, G]]
+
[[Category: Bujacz A]]
-
[[Category: Strzelczyk, P]]
+
[[Category: Bujacz G]]
-
[[Category: Beta barrel]]
+
[[Category: Strzelczyk P]]
-
[[Category: Biotin-binding protein]]
+
-
[[Category: Biotinylruthenocene]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: Hen egg white]]
+

Current revision

Crystal structure of avidin - biotinylruthenocene complex

PDB ID 4i60

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4i60"
Personal tools