This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4m53

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:41, 8 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='4m53' size='340' side='right'caption='[[4m53]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='4m53' size='340' side='right'caption='[[4m53]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4m53]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sacs2 Sacs2]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3sjy 3sjy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M53 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4M53 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4m53]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus_P2 Saccharolobus solfataricus P2]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3sjy 3sjy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M53 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4M53 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GCP:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANYLATE+ESTER'>GCP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4m0l|4m0l]], [[4m2l|4m2l]], [[4m4s|4m4s]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GCP:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANYLATE+ESTER'>GCP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">eif2g ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273057 SACS2])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4m53 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m53 OCA], [https://pdbe.org/4m53 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4m53 RCSB], [https://www.ebi.ac.uk/pdbsum/4m53 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4m53 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4m53 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m53 OCA], [http://pdbe.org/4m53 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4m53 RCSB], [http://www.ebi.ac.uk/pdbsum/4m53 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4m53 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/IF2G_SULSO IF2G_SULSO]] eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA (By similarity).
+
[https://www.uniprot.org/uniprot/IF2G_SACS2 IF2G_SACS2] eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.[HAMAP-Rule:MF_00119]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 24:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Sacs2]]
+
[[Category: Saccharolobus solfataricus P2]]
-
[[Category: Arkhipova, V I]]
+
[[Category: Arkhipova VI]]
-
[[Category: Gabdulkhakov, A G]]
+
[[Category: Gabdulkhakov AG]]
-
[[Category: Garber, M B]]
+
[[Category: Garber MB]]
-
[[Category: Lazopulo, A M]]
+
[[Category: Lazopulo AM]]
-
[[Category: Lazopulo, S M]]
+
[[Category: Lazopulo SM]]
-
[[Category: Nikonov, O S]]
+
[[Category: Nikonov OS]]
-
[[Category: Nikonov, S V]]
+
[[Category: Nikonov SV]]
-
[[Category: Nikulin, A D]]
+
[[Category: Nikulin AD]]
-
[[Category: Stolboushkina, E A]]
+
[[Category: Stolboushkina EA]]
-
[[Category: Aif2]]
+
-
[[Category: Aif2 gamma subunit]]
+
-
[[Category: G-protein]]
+
-
[[Category: Gtp-binding]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Protein biosynthesis]]
+
-
[[Category: Rna-binding]]
+
-
[[Category: Translation]]
+
-
[[Category: Translation initiation]]
+

Current revision

Gamma subunit of the translation initiation factor 2 from Sulfolobus solfataricus in complex with GDPCP

PDB ID 4m53

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools