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4y1p
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 4y1p is ON HOLD Authors: Takahashi, K., Tomita, T., Kuzuyama, T., Nishiyama, M. Description: Crystal structure of 3-isopropylmalate dehydrogenase (...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of 3-isopropylmalate dehydrogenase (Saci_0600) from Sulfolobus acidocaldarius complex with 3-isopropylmalate and Mg2+== | |
| + | <StructureSection load='4y1p' size='340' side='right'caption='[[4y1p]], [[Resolution|resolution]] 2.20Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[4y1p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius_DSM_639 Sulfolobus acidocaldarius DSM 639]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Y1P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Y1P FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IPM:3-ISOPROPYLMALIC+ACID'>IPM</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4y1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4y1p OCA], [https://pdbe.org/4y1p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4y1p RCSB], [https://www.ebi.ac.uk/pdbsum/4y1p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4y1p ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q4JB37_SULAC Q4JB37_SULAC] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Sulfolobus acidocaldarius, a hyperthermoacidophilic archaeon, possesses two beta-decarboxylating dehydrogenase genes, saci_0600 and saci_2375, in its genome, which suggests that it uses these enzymes for three similar reactions in lysine biosynthesis through 2-aminoadipate, leucine biosynthesis, and the tricarboxylic acid cycle. To elucidate their roles, these two genes were expressed in Escherichia coli in the present study and their gene products were characterized. Saci_0600 recognized 3-isopropylmalate as a substrate, but exhibited slight and no activity for homoisocitrate and isocitrate, respectively. Saci_2375 exhibited distinct and similar activities for isocitrate and homoisocitrate, but no detectable activity for 3-isopropylmalate. These results suggest that Saci_0600 is a 3-isopropylmalate dehydrogenase for leucine biosynthesis and Saci_2375 is a dual function enzyme serving as isocitrate-homoisocitrate dehydrogenase. The crystal structure of Saci_0600 was determined as a closed-form complex that binds 3-isopropylmalate and Mg2+, thereby revealing the structural basis for the extreme thermostability and novel-type recognition of the 3-isopropyl moiety of the substrate. | ||
| - | + | Characterization of two beta-decarboxylating dehydrogenases from Sulfolobus acidocaldarius.,Takahashi K, Nakanishi F, Tomita T, Akiyama N, Lassak K, Albers SV, Kuzuyama T, Nishiyama M Extremophiles. 2016 Nov;20(6):843-853. Epub 2016 Sep 2. PMID:27590116<ref>PMID:27590116</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 4y1p" style="background-color:#fffaf0;"></div> |
| - | [[Category: Nishiyama | + | |
| - | [[Category: Takahashi | + | ==See Also== |
| - | [[Category: | + | *[[Isopropylmalate dehydrogenase|Isopropylmalate dehydrogenase]] |
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Sulfolobus acidocaldarius DSM 639]] | ||
| + | [[Category: Kuzuyama T]] | ||
| + | [[Category: Nishiyama M]] | ||
| + | [[Category: Takahashi K]] | ||
| + | [[Category: Tomita T]] | ||
Current revision
Crystal structure of 3-isopropylmalate dehydrogenase (Saci_0600) from Sulfolobus acidocaldarius complex with 3-isopropylmalate and Mg2+
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