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4ym6

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==Crystal structure of the human nucleosome containing 6-4PP (outside)==
==Crystal structure of the human nucleosome containing 6-4PP (outside)==
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<StructureSection load='4ym6' size='340' side='right' caption='[[4ym6]], [[Resolution|resolution]] 3.51&Aring;' scene=''>
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<StructureSection load='4ym6' size='340' side='right'caption='[[4ym6]], [[Resolution|resolution]] 3.51&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4ym6]] is a 10 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YM6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YM6 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4ym6]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YM6 FirstGlance]. <br>
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</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=T64:(6-4)PHOTOPRODUCT'>T64</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.514&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ym5|4ym5]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=T64:(6-4)PHOTOPRODUCT'>T64</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ym6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ym6 OCA], [http://pdbe.org/4ym6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ym6 RCSB], [http://www.ebi.ac.uk/pdbsum/4ym6 PDBsum]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ym6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ym6 OCA], [https://pdbe.org/4ym6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ym6 RCSB], [https://www.ebi.ac.uk/pdbsum/4ym6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ym6 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/H2B1J_HUMAN H2B1J_HUMAN]] Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.<ref>PMID:11859126</ref> <ref>PMID:12860195</ref> <ref>PMID:15019208</ref> Has broad antibacterial activity. May contribute to the formation of the functional antimicrobial barrier of the colonic epithelium, and to the bactericidal activity of amniotic fluid.<ref>PMID:11859126</ref> <ref>PMID:12860195</ref> <ref>PMID:15019208</ref>
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[https://www.uniprot.org/uniprot/H31_HUMAN H31_HUMAN]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 4ym6" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4ym6" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Histone 3D structures|Histone 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Hanaoka, F]]
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[[Category: Homo sapiens]]
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[[Category: Hasegawa, M]]
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[[Category: Large Structures]]
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[[Category: Horikoshi, N]]
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[[Category: Hanaoka F]]
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[[Category: Iwai, S]]
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[[Category: Hasegawa M]]
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[[Category: Kagawa, W]]
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[[Category: Horikoshi N]]
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[[Category: Kurumizaka, H]]
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[[Category: Iwai S]]
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[[Category: Matsumoto, N]]
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[[Category: Kagawa W]]
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[[Category: Matsumoto, S]]
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[[Category: Kurumizaka H]]
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[[Category: Osakabe, A]]
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[[Category: Matsumoto N]]
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[[Category: Sugasawa, K]]
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[[Category: Matsumoto S]]
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[[Category: Tachiwana, H]]
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[[Category: Osakabe A]]
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[[Category: Thoma, N H]]
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[[Category: Sugasawa K]]
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[[Category: Toga, T]]
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[[Category: Tachiwana H]]
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[[Category: Yamamoto, J]]
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[[Category: Thoma NH]]
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[[Category: 6-4 photoproduct]]
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[[Category: Toga T]]
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[[Category: Dna binding]]
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[[Category: Yamamoto J]]
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[[Category: Histone]]
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[[Category: Nucleosome]]
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[[Category: Structural protein-dna complex]]
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Current revision

Crystal structure of the human nucleosome containing 6-4PP (outside)

PDB ID 4ym6

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