This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4ynx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:37, 8 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='4ynx' size='340' side='right'caption='[[4ynx]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
<StructureSection load='4ynx' size='340' side='right'caption='[[4ynx]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4ynx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YNX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YNX FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4ynx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YNX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YNX FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ydiE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ynx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ynx OCA], [http://pdbe.org/4ynx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ynx RCSB], [http://www.ebi.ac.uk/pdbsum/4ynx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ynx ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ynx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ynx OCA], [https://pdbe.org/4ynx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ynx RCSB], [https://www.ebi.ac.uk/pdbsum/4ynx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ynx ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/YDIE_ECOLI YDIE_ECOLI]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ecoli]]
+
[[Category: Escherichia coli K-12]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Nishimura, K]]
+
[[Category: Nishimura K]]
-
[[Category: Tame, J R.H]]
+
[[Category: Tame JRH]]
-
[[Category: Zhang, K Y.J]]
+
[[Category: Zhang KYJ]]
-
[[Category: Conserved]]
+
-
[[Category: Heme uptake]]
+
-
[[Category: Homo-dimer]]
+
-
[[Category: Small]]
+
-
[[Category: Unknown function]]
+

Current revision

Structure of YdiE from E. coli

PDB ID 4ynx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools