4ytm
From Proteopedia
(Difference between revisions)
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
==Crystal structure of Mitochondrial rhodoquinol-fumarate reductase from Ascaris suum with N-biphenyl-3-yl-2-(trifluoromethyl)benzamide== | ==Crystal structure of Mitochondrial rhodoquinol-fumarate reductase from Ascaris suum with N-biphenyl-3-yl-2-(trifluoromethyl)benzamide== | ||
| - | <StructureSection load='4ytm' size='340' side='right' caption='[[4ytm]], [[Resolution|resolution]] 3.40Å' scene=''> | + | <StructureSection load='4ytm' size='340' side='right'caption='[[4ytm]], [[Resolution|resolution]] 3.40Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[4ytm]] is a 8 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[4ytm]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Ascaris_suum Ascaris suum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YTM FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EPH:L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE'>EPH</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=F6A:N-BIPHENYL-3-YL-2-(TRIFLUOROMETHYL)BENZAMIDE'>F6A</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.4Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPH:L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE'>EPH</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=F6A:N-BIPHENYL-3-YL-2-(TRIFLUOROMETHYL)BENZAMIDE'>F6A</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ytm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ytm OCA], [https://pdbe.org/4ytm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ytm RCSB], [https://www.ebi.ac.uk/pdbsum/4ytm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ytm ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/Q33862_ASCSU Q33862_ASCSU] |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 20: | Line 19: | ||
</div> | </div> | ||
<div class="pdbe-citations 4ytm" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 4ytm" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Succinate dehydrogenase 3D structures|Succinate dehydrogenase 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
| Line 25: | Line 27: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Ascaris suum]] | [[Category: Ascaris suum]] | ||
| - | [[Category: Harada | + | [[Category: Large Structures]] |
| - | [[Category: Honma | + | [[Category: Harada S]] |
| - | [[Category: Inaoka | + | [[Category: Honma T]] |
| - | [[Category: Inoue | + | [[Category: Inaoka DK]] |
| - | [[Category: Kita | + | [[Category: Inoue M]] |
| - | [[Category: Nagahama | + | [[Category: Kita K]] |
| - | [[Category: Sakamoto | + | [[Category: Nagahama M]] |
| - | [[Category: Sato | + | [[Category: Sakamoto K]] |
| - | [[Category: Shiba | + | [[Category: Sato D]] |
| - | [[Category: Yamamoto | + | [[Category: Shiba T]] |
| - | [[Category: Yone | + | [[Category: Yamamoto A]] |
| - | + | [[Category: Yone A]] | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of Mitochondrial rhodoquinol-fumarate reductase from Ascaris suum with N-biphenyl-3-yl-2-(trifluoromethyl)benzamide
| |||||||||||
Categories: Ascaris suum | Large Structures | Harada S | Honma T | Inaoka DK | Inoue M | Kita K | Nagahama M | Sakamoto K | Sato D | Shiba T | Yamamoto A | Yone A
